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| | <StructureSection load='5v1q' size='340' side='right'caption='[[5v1q]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='5v1q' size='340' side='right'caption='[[5v1q]], [[Resolution|resolution]] 2.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5v1q]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V1Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5V1Q FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5v1q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V1Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V1Q FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5v1s|5v1s]], [[5v1t|5v1t]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5v1q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v1q OCA], [http://pdbe.org/5v1q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v1q RCSB], [http://www.ebi.ac.uk/pdbsum/5v1q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v1q ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v1q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v1q OCA], [https://pdbe.org/5v1q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v1q RCSB], [https://www.ebi.ac.uk/pdbsum/5v1q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v1q ProSAT]</span></td></tr> |
| | </table> | | </table> |
| - | <div style="background-color:#fffaf0;">
| + | == Function == |
| - | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/A0A0Z8EWX1_STRSU A0A0Z8EWX1_STRSU] |
| - | Posttranslational modification of ribosomally synthesized peptides provides an elegant means for the production of biologically active molecules known as RiPPs (ribosomally synthesized and posttranslationally modified peptides). Although the leader sequence of the precursor peptide is often required for turnover, the exact mode of recognition by the modifying enzymes remains unclear for many members of this class of natural products. Here, we have used X-ray crystallography and computational modeling to examine the role of the leader peptide in the biosynthesis of a homolog of streptide, a recently identified peptide natural product with an intramolecular lysine-tryptophan cross-link, which is installed by the radical S-adenosylmethionine (SAM) enzyme, StrB. We present crystal structures of SuiB, a close ortholog of StrB, in various forms, including apo SuiB, SAM-bound SuiB, and a complex of SuiB with SAM and its peptide substrate, SuiA. Although the N-terminal domain of SuiB adopts a typical RRE (RiPP recognition element) motif, which has been implicated in precursor peptide recognition, we observe binding of the leader peptide in the catalytic barrel rather than the N-terminal domain. Computational simulations support a mechanism in which the leader peptide guides posttranslational modification by positioning the cross-linking residues of the precursor peptide within the active site. Together the results shed light onto binding of the precursor peptide and the associated conformational changes needed for the formation of the unique carbon-carbon cross-link in the streptide family of natural products.
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| - | | + | |
| - | Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.,Davis KM, Schramma KR, Hansen WA, Bacik JP, Khare SD, Seyedsayamdost MR, Ando N Proc Natl Acad Sci U S A. 2017 Sep 11. pii: 201703663. doi:, 10.1073/pnas.1703663114. PMID:28893989<ref>PMID:28893989</ref>
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| - | | + | |
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
| + | |
| - | </div>
| + | |
| - | <div class="pdbe-citations 5v1q" style="background-color:#fffaf0;"></div>
| + | |
| - | == References ==
| + | |
| - | <references/>
| + | |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Ando, N]] | + | [[Category: Streptococcus suis]] |
| - | [[Category: Bacik, J P]] | + | [[Category: Ando N]] |
| - | [[Category: Davis, K M]] | + | [[Category: Bacik JP]] |
| - | [[Category: Lys-trp crosslink]] | + | [[Category: Davis KM]] |
| - | [[Category: Metal binding protein]]
| + | |
| - | [[Category: Metalloenzyme]]
| + | |
| - | [[Category: Radical sam enzyme]]
| + | |
| - | [[Category: Rre domain]]
| + | |
| - | [[Category: Spasm domain]]
| + | |
| - | [[Category: Streptococcus sui]]
| + | |
