This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5x5w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:54, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5x5w' size='340' side='right'caption='[[5x5w]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='5x5w' size='340' side='right'caption='[[5x5w]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5x5w]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Alphaherpesvirus_pseudorabies_virus_prv Alphaherpesvirus pseudorabies virus prv] and [http://en.wikipedia.org/wiki/Pig Pig]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X5W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5X5W FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5x5w]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Suid_alphaherpesvirus_1 Suid alphaherpesvirus 1] and [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X5W FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5x5v|5x5v]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">US6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10345 Alphaherpesvirus pseudorabies virus PRV]), NECTIN1, HVEC, PRR1, PVRL1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9823 PIG])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x5w OCA], [https://pdbe.org/5x5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x5w RCSB], [https://www.ebi.ac.uk/pdbsum/5x5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x5w ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5x5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x5w OCA], [http://pdbe.org/5x5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x5w RCSB], [http://www.ebi.ac.uk/pdbsum/5x5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x5w ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NECT1_PIG NECT1_PIG]] Probably involved in cell adhesion. Receptor for alphaherpesvirus (HSV-1, HSV-2 and pseudorabies virus) entry into cells.
+
[https://www.uniprot.org/uniprot/G3G933_9ALPH G3G933_9ALPH]
==See Also==
==See Also==
Line 16: Line 15:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alphaherpesvirus pseudorabies virus prv]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Pig]]
+
[[Category: Suid alphaherpesvirus 1]]
-
[[Category: Gao, G F]]
+
[[Category: Sus scrofa]]
-
[[Category: Li, A]]
+
[[Category: Gao GF]]
-
[[Category: Lu, G]]
+
[[Category: Li A]]
-
[[Category: Luo, T]]
+
[[Category: Lu G]]
-
[[Category: Qi, J]]
+
[[Category: Luo T]]
-
[[Category: Shi, Y]]
+
[[Category: Qi J]]
-
[[Category: Tian, K]]
+
[[Category: Shi Y]]
-
[[Category: Wu, L]]
+
[[Category: Tian K]]
-
[[Category: Yan, J]]
+
[[Category: Wu L]]
-
[[Category: Glycoprotein d]]
+
[[Category: Yan J]]
-
[[Category: Herpes simplex virus]]
+
-
[[Category: Pseudorabies virus]]
+
-
[[Category: Viral protein-cell adhesion complex]]
+

Current revision

Crystal structure of pseudorabies virus glycoprotein D

PDB ID 5x5w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools