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| <StructureSection load='5x9v' size='340' side='right'caption='[[5x9v]], [[Resolution|resolution]] 3.00Å' scene=''> | | <StructureSection load='5x9v' size='340' side='right'caption='[[5x9v]], [[Resolution|resolution]] 3.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5x9v]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X9V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5X9V FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5x9v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans_Z-2901 Carboxydothermus hydrogenoformans Z-2901]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X9V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X9V FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.003Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5x9u|5x9u]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5x9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x9v OCA], [http://pdbe.org/5x9v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x9v RCSB], [http://www.ebi.ac.uk/pdbsum/5x9v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x9v ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x9v OCA], [https://pdbe.org/5x9v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x9v RCSB], [https://www.ebi.ac.uk/pdbsum/5x9v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x9v ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q3AF10_CARHZ Q3AF10_CARHZ] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Carboxydothermus hydrogenoformans Z-2901]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: An, Y J]] | + | [[Category: An YJ]] |
- | [[Category: Cha, S S]] | + | [[Category: Cha SS]] |
- | [[Category: Ancestral cpn60]]
| + | |
- | [[Category: Archaeal-like bacterial chaperonin]]
| + | |
- | [[Category: Chaperone]]
| + | |
- | [[Category: Closed state]]
| + | |
- | [[Category: Group iii]]
| + | |
- | [[Category: Pivot joint]]
| + | |
| Structural highlights
Function
Q3AF10_CARHZ
Publication Abstract from PubMed
The chaperonins (CPNs) are megadalton sized hollow complexes with two cavities that open and close to encapsulate non-native proteins. CPNs are assigned to two sequence-related groups that have distinct allosteric mechanisms. In Group I CPNs a detachable co-chaperone, GroES, closes the chambers whereas in Group II a built-in lid closes the chambers. Group I CPNs have a bacterial ancestry, whereas Group II CPNs are archaeal in origin. Here we describe open and closed crystal structures representing a new phylogenetic branch of CPNs. These Group III CPNs are divergent in sequence and structure from extant CPNs, but are closed by a built-in lid like Group II CPNs. A nucleotide-sensing loop, present in both Group I and Group II CPNs, is notably absent. We identified inter-ring pivot joints that articulate during ring closure. These Group III CPNs likely represent a relic from the ancestral CPN that formed distinct bacterial and archaeal branches.Chaperonins (CPNs) are ATP-dependent protein-folding machines. Here the authors present the open and closed crystal structures of a Group III CPN from the thermophilic bacterium Carboxydothermus hydrogenoformans, discuss its mechanism and structurally compare it with Group I and II CPNs.
Structural and mechanistic characterization of an archaeal-like chaperonin from a thermophilic bacterium.,An YJ, Rowland SE, Na JH, Spigolon D, Hong SK, Yoon YJ, Lee JH, Robb FT, Cha SS Nat Commun. 2017 Oct 10;8(1):827. doi: 10.1038/s41467-017-00980-z. PMID:29018216[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ An YJ, Rowland SE, Na JH, Spigolon D, Hong SK, Yoon YJ, Lee JH, Robb FT, Cha SS. Structural and mechanistic characterization of an archaeal-like chaperonin from a thermophilic bacterium. Nat Commun. 2017 Oct 10;8(1):827. doi: 10.1038/s41467-017-00980-z. PMID:29018216 doi:http://dx.doi.org/10.1038/s41467-017-00980-z
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