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User:Karsten Theis/Molecular Interactions

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====2. Evaluating the effect of the local environment on molecular interactions.====
====2. Evaluating the effect of the local environment on molecular interactions.====
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* 2.01 Identifying regions exposed or shielded from solvent within a biomolecule. (Novice)
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# <scene name='86/864086/Solvent_exposed/1'>Identifying regions exposed or shielded from solvent within a biomolecule.</scene>
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# Identifying small molecules (e.g. solvent, salt ions, metals, detergents) in a local environment.
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* 2.02 Identifying small molecules in a local environment (e.g. solvent, salt ions, metals, detergents).
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# Predicting the impact of small molecules in the local environment on a molecular interaction.
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# Predicting how the pKa of an ionizable group depends on its local environment.
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* 2.03 Predicting the impact of small molecules in the local environment on a molecular interaction.
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# Proposing changes to the local environment that would yield a desired change in a molecular interaction.
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# Guessing, based on molecular visualization tools, which intermolecular force is most critical to stabilizing a given interaction.
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* 2.04 Predicting how the pKa of an ionizable group depends on its local environment.
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* 2.05 Proposing changes to the local environment that would yield a desired change in a molecular interaction.
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* 2.06 Guessing, based on molecular visualization tools, which intermolecular force is most critical to stabilizing a given interaction.
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</StructureSection>
</StructureSection>

Revision as of 11:20, 8 October 2020

Molecular Interactions is one of the 12 themes of the BioMolViz framework. The theme is about covalent and noncovalent bonding governing ligand binding and subunit‐subunit interactions. Within the theme, there are two groups of competencies. This page provides exemplary 3D scenes with questions that invoke these competencies.

Competencies

MI: covalent and noncovalent bonding governing ligand binding and subunit‐subunit interactions

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Karsten Theis

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