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User:Karsten Theis/Favorite 3D scenes
From Proteopedia
(Difference between revisions)
(New page: ==Consideration for a BioMolViz category tag== This is a collection of scenes I like. They show what is possible in Jmol, and they illustrate the power of biomolecular visualization partic...) |
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<scene name='82/824000/Contacts/4'>3D scene</scene> and [http://proteopedia.org/w/Cellulose#multiple%20layers%20stack page context] | <scene name='82/824000/Contacts/4'>3D scene</scene> and [http://proteopedia.org/w/Cellulose#multiple%20layers%20stack page context] | ||
| - | This shows a model of cellulose (based on structural data, but not a crystal structure). The scene shows interactions of one glucose unit (hydrogen bonding within the layer, hydrophobic interactions between layers) explaining why cellulose is water insoluble and hard to hydrolyze. The scene makes use of slabbing so we can see the context while not obscuring the focal point. It uses the Jmol "contact" command to show both hydrogen bonds and hydrophobic contacts. | + | This shows a model of cellulose (based on structural data, but not a crystal structure). The scene shows interactions of one glucose unit (hydrogen bonding within the layer, hydrophobic interactions between layers) explaining why cellulose is water insoluble and hard to hydrolyze. The scene makes use of slabbing so we can see the context while not obscuring the focal point. It uses the Jmol "contact" command to show both hydrogen bonds and hydrophobic contacts. You can turn off the <jmol> |
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>contact on</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>contact off</scriptWhenUnchecked> | ||
| + | <checked>true</checked> | ||
| + | <text>contacts</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol> to see the hydrogen bond lengths. | ||
http://proteopedia.org/wiki/index.php/Cellulose#multiple%20layers%20stack | http://proteopedia.org/wiki/index.php/Cellulose#multiple%20layers%20stack | ||
Revision as of 10:37, 9 October 2020
Consideration for a BioMolViz category tag
This is a collection of scenes I like. They show what is possible in Jmol, and they illustrate the power of biomolecular visualization particularly well. Each scene comes with one green link to show the scene on this page, and a regular link to see it in the context of the page where I found it.
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Place holder
and page context
