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5y1b

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Current revision (08:18, 22 November 2023) (edit) (undo)
 
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<StructureSection load='5y1b' size='340' side='right'caption='[[5y1b]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
<StructureSection load='5y1b' size='340' side='right'caption='[[5y1b]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5y1b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Asian_corn_borer Asian corn borer]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y1B OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Y1B FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5y1b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ostrinia_furnacalis Ostrinia furnacalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y1B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y1B FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8KL:9-O-3-quinolinium+propylberberine'>8KL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.207&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-N-acetylhexosaminidase Beta-N-acetylhexosaminidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.52 3.2.1.52] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8KL:9-O-3-quinolinium+propylberberine'>8KL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5y1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y1b OCA], [http://pdbe.org/5y1b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y1b RCSB], [http://www.ebi.ac.uk/pdbsum/5y1b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y1b ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y1b OCA], [https://pdbe.org/5y1b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y1b RCSB], [https://www.ebi.ac.uk/pdbsum/5y1b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y1b ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HEXC_OSTFU HEXC_OSTFU] Hydrolyzes one beta-GlcNAc unit at a time from the non-reducing ends of substrates, with a preference for shorter substrates. The 2-acetamido group and the beta-glycoside bond linkage in the substrate are required for its activity. Active with p-nitrophenyl (pNP)-beta-GlcNAc, pNP-beta-GalNAc and chitooligosaccharides (degree of polymerization from 2 to 6), but not with the complex N-glycan substrate (GlcNAcbeta-1,2Manalpha-1,6)(GlcNAcbeta-1,2Manalpha-1,3)Manbeta-1,4GlcNAcbeta-1,4GlcNAc-PA (GnGn-PA), pNP-alpha-GlcNAc or with the long polymer colloidal chitin. Involved in chitin catabolism (PubMed:18959754). Involved in the degradation of old cuticle during the pupation stage (PubMed:21106526).<ref>PMID:18959754</ref> <ref>PMID:21106526</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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*[[Beta-Hexosaminidase|Beta-Hexosaminidase]]
*[[Beta-Hexosaminidase|Beta-Hexosaminidase]]
*[[Beta-Hexosaminidase 3D structures|Beta-Hexosaminidase 3D structures]]
*[[Beta-Hexosaminidase 3D structures|Beta-Hexosaminidase 3D structures]]
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*[[Beta-N-acetylhexosaminidase 3D structures|Beta-N-acetylhexosaminidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Asian corn borer]]
 
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[[Category: Beta-N-acetylhexosaminidase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Duan, Y W]]
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[[Category: Ostrinia furnacalis]]
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[[Category: Li, M]]
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[[Category: Duan YW]]
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[[Category: Liu, T]]
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[[Category: Li M]]
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[[Category: Tang, J Y]]
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[[Category: Liu T]]
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[[Category: Yang, Q]]
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[[Category: Tang JY]]
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[[Category: Zhou, Y]]
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[[Category: Yang Q]]
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[[Category: Berberine derivative]]
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[[Category: Zhou Y]]
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[[Category: Beta-n-acetyl-d-hexosaminidase inhibitor]]
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[[Category: Hydrolase]]
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[[Category: Ostrinia furnacali]]
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Current revision

Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with a berberine derivative (SYSU-00679)

PDB ID 5y1b

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