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| <StructureSection load='5y7f' size='340' side='right'caption='[[5y7f]], [[Resolution|resolution]] 1.35Å' scene=''> | | <StructureSection load='5y7f' size='340' side='right'caption='[[5y7f]], [[Resolution|resolution]] 1.35Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5y7f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_10518 Atcc 10518]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y7F OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Y7F FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5y7f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermomyces_dupontii Thermomyces dupontii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y7F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y7F FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5h18|5h18]]</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y7f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y7f OCA], [https://pdbe.org/5y7f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y7f RCSB], [https://www.ebi.ac.uk/pdbsum/5y7f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y7f ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5y7f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y7f OCA], [http://pdbe.org/5y7f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y7f RCSB], [http://www.ebi.ac.uk/pdbsum/5y7f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y7f ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0A2D0TCJ6_TALTH A0A2D0TCJ6_TALTH] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Atcc 10518]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Hayashi, Y]] | + | [[Category: Thermomyces dupontii]] |
- | [[Category: Kamikubo, H]] | + | [[Category: Hayashi Y]] |
- | [[Category: Kato, K]] | + | [[Category: Kamikubo H]] |
- | [[Category: Murata, K]] | + | [[Category: Kato K]] |
- | [[Category: Satoh, T]] | + | [[Category: Murata K]] |
- | [[Category: Song, C]] | + | [[Category: Satoh T]] |
- | [[Category: Toshimori, T]] | + | [[Category: Song C]] |
- | [[Category: Uchihashi, T]] | + | [[Category: Toshimori T]] |
- | [[Category: Zhu, T]] | + | [[Category: Uchihashi T]] |
- | [[Category: Endoplasmic reticulum]]
| + | [[Category: Zhu T]] |
- | [[Category: Folding sensor]]
| + | |
- | [[Category: Glucosyltransferase]]
| + | |
- | [[Category: Quality control]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
A0A2D0TCJ6_TALTH
Publication Abstract from PubMed
In the endoplasmic reticulum (ER), a protein quality control system facilitates the efficient folding of newly synthesised proteins. In this system, a series of N-linked glycan intermediates displayed on the protein surface serve as quality tags. The ER folding-sensor enzyme UDP-glucose:glycoprotein glucosyltransferase (UGGT) acts as a gatekeeper in the ER quality control system by specifically catalysing monoglucosylation onto incompletely folded glycoproteins, thereby enabling them to interact with lectin-chaperone complexes. Here we characterise the dynamic structure of this enzyme. Our crystallographic data demonstrate that the sensor region is composed of four thioredoxin-like domains followed by a beta-rich domain, which are arranged into a C-shaped structure with a large central cavity, while the C-terminal catalytic domain undergoes a ligand-dependent conformational alteration. Furthermore, small-angle X-ray scattering, cryo-electron microscopy and high-speed atomic force microscopy have demonstrated that UGGT has a flexible modular structure in which the smaller catalytic domain is tethered to the larger folding-sensor region with variable spatial arrangements. These findings provide structural insights into the working mechanism whereby UGGT operates as a folding-sensor against a variety of glycoprotein substrates through its flexible modular structure possessing extended hydrophobic surfaces for the recognition of unfolded substrates.
Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.,Satoh T, Song C, Zhu T, Toshimori T, Murata K, Hayashi Y, Kamikubo H, Uchihashi T, Kato K Sci Rep. 2017 Sep 22;7(1):12142. doi: 10.1038/s41598-017-12283-w. PMID:28939828[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Satoh T, Song C, Zhu T, Toshimori T, Murata K, Hayashi Y, Kamikubo H, Uchihashi T, Kato K. Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT. Sci Rep. 2017 Sep 22;7(1):12142. doi: 10.1038/s41598-017-12283-w. PMID:28939828 doi:http://dx.doi.org/10.1038/s41598-017-12283-w
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