5y9c

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Current revision (12:21, 6 November 2024) (edit) (undo)
 
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<StructureSection load='5y9c' size='340' side='right'caption='[[5y9c]], [[Resolution|resolution]] 3.44&Aring;' scene=''>
<StructureSection load='5y9c' size='340' side='right'caption='[[5y9c]], [[Resolution|resolution]] 3.44&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5y9c]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9C OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Y9C FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5y9c]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Human_papillomavirus_58 Human papillomavirus 58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y9C FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5y9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9c OCA], [http://pdbe.org/5y9c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y9c RCSB], [http://www.ebi.ac.uk/pdbsum/5y9c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9c ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.443&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9c OCA], [https://pdbe.org/5y9c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y9c RCSB], [https://www.ebi.ac.uk/pdbsum/5y9c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9c ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/VL1_HPV58 VL1_HPV58]] Forms an icosahedral capsid with a T=7 symmetry and a 50 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with L2 proteins. Binds to heparan sulfate proteoglycans on cell surface of basal layer keratinocytes to provide initial virion attachment. This binding mediates a conformational change in the virus capsid that facilitates efficient infection. The virion enters the host cell via endocytosis. During virus trafficking, L1 protein dissociates from the viral DNA and the genomic DNA is released to the host nucleus. The virion assembly takes place within the cell nucleus. Encapsulates the genomic DNA together with protein L2.[HAMAP-Rule:MF_04002]<ref>PMID:12610160</ref>
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[https://www.uniprot.org/uniprot/VL1_HPV58 VL1_HPV58] Forms an icosahedral capsid with a T=7 symmetry and a 50 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with L2 proteins. Binds to heparan sulfate proteoglycans on cell surface of basal layer keratinocytes to provide initial virion attachment. This binding mediates a conformational change in the virus capsid that facilitates efficient infection. The virion enters the host cell via endocytosis. During virus trafficking, L1 protein dissociates from the viral DNA and the genomic DNA is released to the host nucleus. The virion assembly takes place within the cell nucleus. Encapsulates the genomic DNA together with protein L2.[HAMAP-Rule:MF_04002]<ref>PMID:12610160</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
*[[Antibody 3D structures|Antibody 3D structures]]
*[[Antibody 3D structures|Antibody 3D structures]]
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*[[Major capsid protein L1|Major capsid protein L1]]
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
*[[3D structures of non-human antibody|3D structures of non-human antibody]]
*[[3D structures of non-human antibody|3D structures of non-human antibody]]
== References ==
== References ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human papillomavirus 58]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Li, S W]]
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[[Category: Li SW]]
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[[Category: Li, Z H]]
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[[Category: Li ZH]]
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[[Category: Capsid protein]]
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[[Category: Structural protein-immune system complex]]
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Current revision

Crystal structure of HPV58 pentamer in complex with the Fab fragment of antibody A12A3

PDB ID 5y9c

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