Proteopedia talk:Wishlist
From Proteopedia
(Difference between revisions)
(more suggestions for SAT) |
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| - | == More tools in "selections" tab == | + | === More tools in "selections" tab === |
Add <code>pick from selection</code> to do "select selected and *". | Add <code>pick from selection</code> to do "select selected and *". | ||
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Add <code>clear form</code> to set all text boxes to "all" | Add <code>clear form</code> to set all text boxes to "all" | ||
| - | + | === More tools in "representations" tab === | |
| - | = | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | == More tools in "representations" tab == | + | |
Add <code>clear form</code> to uncheck all check boxes (next to <code>hide selection</code> button?) | Add <code>clear form</code> to uncheck all check boxes (next to <code>hide selection</code> button?) | ||
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| - | == Suggestions for under the Jmol panel == | + | === Suggestions for under the Jmol panel === |
Either: | Either: | ||
Revision as of 17:35, 27 October 2020
Contents |
To-Do
Some redesign of the options in the SAT:
List of items in "selections" tab of the SAT
| heading | current submenu |
current command |
proposal submenu |
proposal command |
|
| all | all | all | all | ||
| protein | Protein | ||||
| all protein | protein | all protein | |||
| alpha carbon | alpha | alpha carbon | |||
| backbone/mainchain | backbone | backbone/mainchain | protein and backbone | ||
| helix | helix | sidechain | protein and sidechain | ||
| sheet | sheet | helix | |||
| sidechain | sidechain | sheet | |||
| turn | turn | turn | |||
| non-protein | Nucleic acid | ||||
| base | base | RNA | rna | ||
| carbohydrate | carbohydrate | DNA | dna | ||
| dna | dna | bases | base | ||
| hetero | hetero | purines | purine | ||
| ions | ions | pyrimidines | pyrimidine | ||
| ligand | ligand | backbone/mainchain | nucleic and backbone | ||
| nucleic | nucleic | ||||
| rna | rna | Other | |||
| solvent | solvent | all ligands | ligand | ||
| water | water | solvent/water | solvent | ||
| carbohydrate | carbohydrate | ||||
| protein residues | all hetero | hetero | |||
| acidic/negative | acidic | ions | ions | ||
| acyclic | acyclic | ||||
| aliphatic | aliphatic | ||||
| all residues | amino | Protein residues | |||
| aromatic | aromatic | Amino acid properties | |||
| basic/positive | basic | acidic/negative | acidic | ||
| buried | buried | basic/positive | basic | ||
| charged | charged | charged | charged | ||
| cyclic | cyclic | polar | polar | ||
| hydrophobic | hydrophobic | hydrophobic | hydrophobic | ||
| large | large | aromatic | aromatic | ||
| medium | medium | ||||
| neutral | neutral | ||||
| polar | polar | ||||
| small | small | ||||
| surface | surface | ||||
| nucleotides | Nucleic residues | ||||
| dA | dA | dA | dA | ||
| A | A | A | A | ||
| dC | dC | dC | dC | ||
| C | C | C | C | ||
| dG | dG | dG | dG | ||
| G | G | G | G | ||
| dI | dI | dI | dI | ||
| I | I | I | I | ||
| purine | purine | dT | dT | ||
| pyrimidine | pyrimidine | T | T | ||
| dT | dT | dU | dU | ||
| T | T | U | U | ||
| dU | dU | ||||
| U | U | ||||
More tools in "selections" tab
Add pick from selection to do "select selected and *".
Add clear form to set all text boxes to "all"
More tools in "representations" tab
Add clear form to uncheck all check boxes (next to hide selection button?)
Combine the following items in a new area between the two existing ones:
center selected atoms
center visible atoms
zshade on/off
and the existing slab from above.
Suggestions for under the Jmol panel
Either: number of atoms selected _______
Or: after "Show Selected with Halos", just show the number in parentheses as done in the Jmol right-click menu
