Proteopedia talk:Wishlist
From Proteopedia
(Difference between revisions)
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<td>aromatic</td> | <td>aromatic</td> | ||
<td colspan="2">'''Amino acid properties'''</td> | <td colspan="2">'''Amino acid properties'''</td> | ||
| - | <td></td> | + | <td>''maybe "by amino acid property"''</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 349: | Line 349: | ||
<td></td> | <td></td> | ||
<td colspan='2'>'''Nucleic residues'''</td> | <td colspan='2'>'''Nucleic residues'''</td> | ||
| - | <td></td> | + | <td>''but we can remove this altogether'' </td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 475: | Line 475: | ||
Add <code>clear form</code> to uncheck all check boxes (next to <code>hide selection</code> button?) | Add <code>clear form</code> to uncheck all check boxes (next to <code>hide selection</code> button?) | ||
| - | Combine the following items in a new area between the two existing ones: | + | Combine the following items in a new area between the two existing ones: | |
| - | <code>center selected atoms</code> | + | <code>center selected atoms</code> | |
| - | <code>center visible atoms</code> | + | <code>center visible atoms</code> | |
| - | <code>zshade on/off</code> | + | <code>zshade on/off</code> | |
and the existing slab from above. | and the existing slab from above. | ||
Revision as of 08:48, 28 October 2020
Contents |
To-Do
Some redesign of the options in the SAT:
List of items in "selections" tab of the SAT
| heading | current submenu |
current command |
proposal submenu |
proposal command |
|
| all | all | all | all | ||
| protein | Protein | ||||
| all protein | protein | all protein | |||
| alpha carbon | alpha | alpha carbon | |||
| backbone/mainchain | backbone | backbone/mainchain | protein and backbone | ||
| helix | helix | sidechain | protein and sidechain | ||
| sheet | sheet | helix | |||
| sidechain | sidechain | sheet | |||
| turn | turn | turn | |||
| non-protein | Nucleic acid | ||||
| base | base | RNA | rna | ||
| carbohydrate | carbohydrate | DNA | dna | ||
| dna | dna | bases | base | ||
| hetero | hetero | purines | purine | ||
| ions | ions | pyrimidines | pyrimidine | ||
| ligand | ligand | backbone/mainchain | nucleic and backbone | ||
| nucleic | nucleic | ||||
| rna | rna | Other | |||
| solvent | solvent | all ligands | ligand | ||
| water | water | solvent/water | solvent | ||
| carbohydrate | carbohydrate | ||||
| protein residues | all hetero | hetero | |||
| acidic/negative | acidic | ions | ions | ||
| acyclic | acyclic | ||||
| aliphatic | aliphatic | ||||
| all residues | amino | Protein residues | |||
| aromatic | aromatic | Amino acid properties | maybe "by amino acid property" | ||
| basic/positive | basic | acidic/negative | acidic | ||
| buried | buried | basic/positive | basic | ||
| charged | charged | charged | charged | ||
| cyclic | cyclic | polar | polar | ||
| hydrophobic | hydrophobic | hydrophobic | hydrophobic | ||
| large | large | aromatic | aromatic | ||
| medium | medium | ||||
| neutral | neutral | ||||
| polar | polar | ||||
| small | small | ||||
| surface | surface | ||||
| nucleotides | Nucleic residues | but we can remove this altogether | |||
| dA | dA | dA | dA | ||
| A | A | A | A | ||
| dC | dC | dC | dC | ||
| C | C | C | C | ||
| dG | dG | dG | dG | ||
| G | G | G | G | ||
| dI | dI | dI | dI | ||
| I | I | I | I | ||
| purine | purine | dT | dT | ||
| pyrimidine | pyrimidine | T | T | ||
| dT | dT | dU | dU | ||
| T | T | U | U | ||
| dU | dU | ||||
| U | U | ||||
More tools in "selections" tab
Add pick from selection to do "select selected and *".
Add clear form to set all text boxes to "all"
More tools in "representations" tab
Add clear form to uncheck all check boxes (next to hide selection button?)
Combine the following items in a new area between the two existing ones: |
center selected atoms |
center visible atoms |
zshade on/off |
and the existing slab from above.
Suggestions for under the Jmol panel
Either: number of atoms selected _______
Or: after "Show Selected with Halos", just show the number in parentheses as done in the Jmol right-click menu
