We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

6iry

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:52, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6iry' size='340' side='right'caption='[[6iry]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='6iry' size='340' side='right'caption='[[6iry]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6iry]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IRY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6IRY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6iry]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IRY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IRY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pcif1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6iry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iry OCA], [http://pdbe.org/6iry PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6iry RCSB], [http://www.ebi.ac.uk/pdbsum/6iry PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6iry ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6iry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iry OCA], [https://pdbe.org/6iry PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6iry RCSB], [https://www.ebi.ac.uk/pdbsum/6iry PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6iry ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CAPAM_DANRE CAPAM_DANRE] Cap-specific adenosine methyltransferase that catalyzes formation of N(6),2'-O-dimethyladenosine cap (m6A(m)) by methylating the adenosine at the second transcribed position of capped mRNAs (PubMed:30467178).<ref>PMID:30467178</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Brachidanio rerio]]
+
[[Category: Danio rerio]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Hirano, S]]
+
[[Category: Hirano S]]
-
[[Category: Ishitani, R]]
+
[[Category: Ishitani R]]
-
[[Category: Nishimasu, H]]
+
[[Category: Nishimasu H]]
-
[[Category: Nureki, O]]
+
[[Category: Nureki O]]
-
[[Category: M6a]]
+
-
[[Category: Methyltransferase]]
+
-
[[Category: N6-methyladenosine]]
+
-
[[Category: Rna methylation]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH

PDB ID 6iry

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6iry"
Personal tools