Jmol/Useful one-liners
From Proteopedia
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(save orientation, select whole residues, frame all) |
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Defines the currently selected atoms as "aoi". You can use this later in commands such as "select aoi" to select the atoms again. | Defines the currently selected atoms as "aoi". You can use this later in commands such as "select aoi" to select the atoms again. | ||
| - | + | save orientation view1 | |
| - | + | restore orientation view1 | |
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| - | restore orientation | + | |
<jmol><jmolButton><text>save orientation view1</text><script>save orientation view1</script></jmolButton></jmol> | <jmol><jmolButton><text>save orientation view1</text><script>save orientation view1</script></jmolButton></jmol> | ||
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select within(group, selected) | select within(group, selected) | ||
This expands the selection to include all atoms belonging to the same residues or groups than the currently selected atoms. | This expands the selection to include all atoms belonging to the same residues or groups than the currently selected atoms. | ||
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| + | ===Remember things=== | ||
===Not yet categorized=== | ===Not yet categorized=== | ||
Revision as of 17:44, 29 October 2020
This is a collection of useful one-liners in Jmol. While the Scene authoring tools give you access to a lot of Jmol's functionality, they don't cover the entire scripting language. However, the SAT contains an input box for entering Jmol commands directly. This page collects commands that might be entered into that textbox to achieve effects not otherwise possible. Viewers of Proteopedia pages might find occasional use of these one-liners as well. To enter them, you first have to right-click on the Jmol window and open a console. For more complex Jmol commands, see Jmol/Using the console.
Examples
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