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Sigma factor 3D structures

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**[[6dxo]] – SF-A + BLDN – ''Streptomyces venezuelae''<br />
**[[6dxo]] – SF-A + BLDN – ''Streptomyces venezuelae''<br />
-
*Sigma factor complex with protein and DNA and RNA
+
*E. coli sigma factor complex with protein, DNA and RNA
-
**[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]] – TtSF-A in reiterative transcription complex <br />
 
-
**[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]] – TtSF-A in initial transcription complex <br />
 
-
**[[6wox]], [[6woy]] – TtSF-A in initial transcription complex + CPT<br />
 
-
**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />
 
-
**[[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]] – TtSF-A in reiterative transcription complex <br />
 
-
**[[5voi]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA <br />
 
-
**[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP<br />
 
-
**[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD<br />
 
-
**[[5d4e]] – TtSF-A in transcription initiation complex + CTP + dephosphate-CoA<br />
 
-
**[[3n97]] – TaSF-A region 4 + RNAP subunits α + DNA<br />
 
-
**[[4xlp]], [[4xlq]], [[5tjg]] – TaSF-A in transcription initiation complex<br />
 
-
**[[1l9z]] – TaSF-A + RNAP subunits α,β,β’,ω + DNA – Cryo EM <br />
 
-
**[[4xlr]], [[4xls]] – TaSF-A in transcription initiation complex + CarD-like transcriptional regulator<br />
 
-
**[[1rio]] - TaSF-A region 4 + repression protein CI + DNA<br />
 
**[[6p1k]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM<br />
**[[6p1k]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM<br />
**[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω <br />
**[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω <br />
Line 104: Line 90:
**[[4jk1]], [[4jk2]], [[4jkr]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P<br />
**[[4jk1]], [[4jk2]], [[4jkr]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P<br />
**[[4yln]], [[4ylo]], [[4ylp]], [[6n62]] – EcSF-70 in transcription initiation complex<br />
**[[4yln]], [[4ylo]], [[4ylp]], [[6n62]] – EcSF-70 in transcription initiation complex<br />
 +
**[[6b6h]] – EcSF-70 in transcription activation complex - Cryo EM<br />
**[[5nss]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM<br />
**[[5nss]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM<br />
**[[5nsr]], [[6gh6]], [[6gh5]], [[6gfw]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br />
**[[5nsr]], [[6gh6]], [[6gh5]], [[6gfw]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br />
Line 124: Line 111:
**[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM<br />
**[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM<br />
**[[6pmi]], [[6pmj]] – EcSF-28 in transcription initiation complex – Cryo EM<br />
**[[6pmi]], [[6pmj]] – EcSF-28 in transcription initiation complex – Cryo EM<br />
 +
**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex <br />
 +
 +
*Other sigma factor complex with protein, DNA and RNA
 +
 +
**[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]], [[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]] – TtSF-A in reiterative transcription complex <br />
 +
**[[5vo8]] – TtSF-A in reiterative transcription complex + GTP<br />
 +
**[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]], [[5e17]], [[5e18]] – TtSF-A in initial transcription complex <br />
 +
**[[6wox]], [[6woy]] – TtSF-A in initial transcription complex + CPT<br />
 +
**[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br />
 +
**[[5voi]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA <br />
 +
**[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP<br />
 +
**[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD<br />
 +
**[[5d4e]] – TtSF-A in transcription initiation complex + CTP + dephosphate-CoA<br />
 +
**[[5x22]] – TtSF-A in transcription initiation complex + CMPPP<br />
 +
**[[5i2d]] – TtSF-A in transcription activation complex + transcriptional regulator <br />
 +
**[[3n97]] – TaSF-A region 4 + RNAP subunits α + DNA<br />
 +
**[[4xln]], [[4xlp]], [[4xlq]], [[5tjg]] – TaSF-A in transcription initiation complex<br />
 +
**[[1l9z]] – TaSF-A + RNAP subunits α,β,β’,ω + DNA – Cryo EM <br />
 +
**[[4xlr]], [[4xls]] – TaSF-A in transcription initiation complex + CarD-like transcriptional regulator<br />
 +
**[[1rio]] - TaSF-A region 4 + repression protein CI + DNA<br />
**[[6dcf]] – MtSF-A in transcription initiation complex + RBPA<br />
**[[6dcf]] – MtSF-A in transcription initiation complex + RBPA<br />
-
**[[5uha]] – MtSF-A in transcription initiation complex<br />
+
**[[5uha]], [[5uh5]], [[5uh8]], [[5uh9]] – MtSF-A in transcription initiation complex<br />
**[[6c04]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br />
**[[6c04]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br />
**[[5uhe]], [[5uhf]] – MtSF-A in transcription initiation complex + inhibitor<br />
**[[5uhe]], [[5uhf]] – MtSF-A in transcription initiation complex + inhibitor<br />
Line 133: Line 140:
**[[6dvc]], [[6dvb]], [[6dv9]], [[6tye]], [[6tyf]], [[6tyg]] – MtSF-L in transcription initiation complex <br />
**[[6dvc]], [[6dvb]], [[6dv9]], [[6tye]], [[6tyf]], [[6tyg]] – MtSF-L in transcription initiation complex <br />
**[[5tw1]], [[6cce]] – MsSF-A in transcription initiation complex + peptide - ''Mycobacterium smegmatis''<br />
**[[5tw1]], [[6cce]] – MsSF-A in transcription initiation complex + peptide - ''Mycobacterium smegmatis''<br />
-
**[[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex<br />
+
**[[5vi5]], [[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex<br />
**[[6ccv]] – MsSF-A in transcription initiation complex + peptide + RbpA + antibiotic<br />
**[[6ccv]] – MsSF-A in transcription initiation complex + peptide + RbpA + antibiotic<br />
*Sigma factor complex with protein and DNA and antibiotics
*Sigma factor complex with protein and DNA and antibiotics
-
**[[4oin]], [[4oip]], [[4oiq]], [[4oir]] – TtSF-A + RNAP subunits α,β,β’,ω + antibiotic + DNA<br />
+
**[[4oin]], [[4oip]], [[4oiq]], [[4oir]], [[5x21]] – TtSF-A in transcription initiation complex + antibiotic <br />
**[[6cuu]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />
**[[6cuu]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />
-
**[[5uhg]] – MtSF-A + MtRNAP subunits α,β,β’,ω + DNA + antibiotic + inhibitor<br />
+
**[[5uhg]] – MtSF-A in transcription initiation complex + antibiotic + inhibitor<br />
-
**[[5uhb]] – MtSF-A + MtRNAP subunits α,β,β’,ω + DNA + antibiotic<br />
+
**[[5uh6]], [[5uhc]], [[5uhd]], [[5uhb]] – MtSF-A in transcription initiation complex + antibiotic<br />
-
**[[6bzo]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA + antibiotic - Cryo EM<br />
+
**[[6bzo]] – MtSF-A in transcription initiation complex + RbpA + antibiotic - Cryo EM<br />
**[[6vvx]], [[6vvz]] – MtSF-A in transcription initiation complex + antibiotic – Cryo EM<br />
**[[6vvx]], [[6vvz]] – MtSF-A in transcription initiation complex + antibiotic – Cryo EM<br />
**[[6vvy]], [[6vw0]] – MtSF-A in transcription open promoter complex + antibiotic – Cryo EM<br />
**[[6vvy]], [[6vw0]] – MtSF-A in transcription open promoter complex + antibiotic – Cryo EM<br />
Line 148: Line 155:
**[[6eec]], [[6ee8]], [[6edt]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + CARD + DNA + antibiotic – Cryo EM<br />
**[[6eec]], [[6ee8]], [[6edt]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + CARD + DNA + antibiotic – Cryo EM<br />
-
*Sigma factor complex with protein, DNA and RNA
 
- 
-
**[[5vi5]] – MsSF-A + MsRNAP subunits α,β,β’,ω + RbpA + DNA + RNA<br />
 
-
**[[4xln]] – TaSF-A + RNAP subunits α,β,β’,ω + DNA + RNA <br />
 
-
**[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 + EcRNAP subunits α,β,β’,ω + DNA + RNA<br />
 
-
**[[6b6h]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + DNA + RNA - Cryo EM<br />
 
-
**[[5e17]], [[5e18]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA<br />
 
-
**[[5x22]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA + CMPPP<br />
 
-
**[[5vo8]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA + GTP<br />
 
-
**[[5x21]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic<br />
 
-
**[[5i2d]] – TtSF-A + TtRNAP subunits α,β,β’,ω + transcriptional regulator + DNA + RNA<br />
 
-
**[[5uh5]], [[5uh8]], [[5uh9]] – MtSF-A + MtRNAP subunits α,β,β’,ω + DNA + RNA<br />
 
-
**[[5uh6]], [[5uhc]], [[5uhd]], [[5x21]] – MtSF-A + TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic<br />
 
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 10:09, 4 November 2020

3D structures of sigma factor

Updated on 04-November-2020

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman, Jaime Prilusky

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