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| <StructureSection load='6c62' size='340' side='right'caption='[[6c62]], [[Resolution|resolution]] 1.95Å' scene=''> | | <StructureSection load='6c62' size='340' side='right'caption='[[6c62]], [[Resolution|resolution]] 1.95Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6c62]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._(strain_adp) Pseudomonas sp. (strain adp)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C62 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6C62 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6c62]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._ADP Pseudomonas sp. ADP]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C62 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C62 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Biuret_amidohydrolase Biuret amidohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.84 3.5.1.84] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c62 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c62 OCA], [https://pdbe.org/6c62 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c62 RCSB], [https://www.ebi.ac.uk/pdbsum/6c62 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c62 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6c62 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c62 OCA], [http://pdbe.org/6c62 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c62 RCSB], [http://www.ebi.ac.uk/pdbsum/6c62 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c62 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/ATZE_PSESD ATZE_PSESD] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Biuret amidohydrolase]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Easton, C J]] | + | [[Category: Pseudomonas sp. ADP]] |
- | [[Category: Esquirol, L]] | + | [[Category: Easton CJ]] |
- | [[Category: French, N G]] | + | [[Category: Esquirol L]] |
- | [[Category: Hartley, C J]] | + | [[Category: French NG]] |
- | [[Category: Hideki, O]] | + | [[Category: Hartley CJ]] |
- | [[Category: Liu, J W]] | + | [[Category: Hideki O]] |
- | [[Category: Newman, J]] | + | [[Category: Liu JW]] |
- | [[Category: Peat, T S]] | + | [[Category: Newman J]] |
- | [[Category: Scott, C]] | + | [[Category: Peat TS]] |
- | [[Category: Wilding, M]] | + | [[Category: Scott C]] |
- | [[Category: Atrazine]]
| + | [[Category: Wilding M]] |
- | [[Category: Atze]]
| + | |
- | [[Category: Biuret hydrolase]]
| + | |
- | [[Category: Cyanuric acid]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Ser-cisser-lys hydrolase]]
| + | |
| Structural highlights
Function
ATZE_PSESD
Publication Abstract from PubMed
Cyanuric acid is a metabolic intermediate of s-triazines, such as atrazine (a common herbicide) and melamine (used in resins and plastics). Cyanuric acid is mineralized to ammonia and carbon dioxide by the soil bacterium Pseudomonas sp. strain ADP via three hydrolytic enzymes (AtzD, AtzE, and AtzF). Here, we report the purification and biochemical and structural characterization of AtzE. Contrary to previous reports, we found that AtzE is not a biuret amidohydrolase, but instead catalyzes the hydrolytic deamination of 1-carboxybiuret. X-ray crystal structures of apo AtzE and AtzE bound with the suicide inhibitor phenyl phosphorodiamidate revealed that the AtzE enzyme complex consists of two independent molecules in the asymmetric unit. We also show that AtzE forms an alpha2beta2 heterotetramer with a hitherto unidentified 68-amino-acid-long protein (AtzG) encoded in the cyanuric acid mineralization operon from Pseudomonas sp. strain ADP. Moreover, we observed that AtzG is essential for the production of soluble, active AtzE and that this obligate interaction is a vestige of their shared evolutionary origin. We propose that AtzEG was likely recruited into the cyanuric acid-mineralizing pathway from an ancestral glutamine transamidosome that required protein-protein interactions to enforce the exclusion of solvent from the transamidation reaction.
An unexpected vestigial protein complex reveals the evolutionary origins of an s-triazine catabolic enzyme.,Esquirol L, Peat TS, Wilding M, Liu JW, French NG, Hartley CJ, Onagi H, Nebl T, Easton CJ, Newman J, Scott C J Biol Chem. 2018 Mar 9. pii: RA118.001996. doi: 10.1074/jbc.RA118.001996. PMID:29523689[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Esquirol L, Peat TS, Wilding M, Liu JW, French NG, Hartley CJ, Onagi H, Nebl T, Easton CJ, Newman J, Scott C. An unexpected vestigial protein complex reveals the evolutionary origins of an s-triazine catabolic enzyme. J Biol Chem. 2018 Mar 9. pii: RA118.001996. doi: 10.1074/jbc.RA118.001996. PMID:29523689 doi:http://dx.doi.org/10.1074/jbc.RA118.001996
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