6t5e
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Hydroxylamine Oxidoreductase from Brocadia fulgida== | ==Hydroxylamine Oxidoreductase from Brocadia fulgida== | ||
| - | <StructureSection load='6t5e' size='340' side='right'caption='[[6t5e]]' scene=''> | + | <StructureSection load='6t5e' size='340' side='right'caption='[[6t5e]], [[Resolution|resolution]] 3.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T5E OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[6t5e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Candidatus_brocadia_fulgida Candidatus brocadia fulgida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T5E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6T5E FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6t5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t5e OCA], [https://pdbe.org/6t5e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6t5e RCSB], [https://www.ebi.ac.uk/pdbsum/6t5e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6t5e ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Anaerobic Ammonium Oxidation ("anammox") is a bacterial process in which nitrite and ammonium are converted into nitrogen gas and water, yielding energy for the cell. Anammox is an important branch of the global biological nitrogen cycle, being responsible for up to 50% of the yearly nitrogen removal from the oceans. Strikingly, the anammox process uniquely relies on the extremely reactive and toxic compound hydrazine as a free intermediate. Given its global importance and biochemical novelty, there is considerable interest in the enzymes at the heart of the anammox pathway. Unfortunately, obtaining these enzymes in sufficiently large amounts for biochemical and structural studies is problematic, given the slow growth of pure cultures of anammox bacteria when high cell densities are required. However, the anammox process is being applied in wastewater treatment to remove nitrogenous waste in processes like DEamMONification (DEMON). In plants using such processes, which rely on a combination of aerobic ammonia-oxidizers and anammox organisms, kilogram amounts of anammox bacteria-containing sludge are readily available. Here, we report a protein isolation protocol starting from anammox cells present in DEMON sludge from a wastewater treatment plan that readily yields pure preparations of key anammox proteins in the tens of milligrams, including hydrazine synthase HZS and hydrazine dehydrogenase (HDH), as well as hydroxylamine oxidoreductase (HAO). HDH and HAO were active and of sufficient quality for biochemical studies and for HAO, the crystal structure could be determined. The method presented here provides a viable way to obtain materials for the study of proteins not only from the central anammox metabolism but also for the study of other exciting aspects of anammox bacteria, such as for example, their unusual ladderane lipids. | ||
| + | |||
| + | Purification of the key enzyme complexes of the anammox pathway from DEMON sludge.,Akram M, Dietl A, Muller M, Barends TRM Biopolymers. 2021 Apr 2:e23428. doi: 10.1002/bip.23428. PMID:33798263<ref>PMID:33798263</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6t5e" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Candidatus brocadia fulgida]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Akram M]] | + | [[Category: Akram, M]] |
| - | [[Category: Barends T]] | + | [[Category: Barends, T]] |
| - | [[Category: Dietl A]] | + | [[Category: Dietl, A]] |
| - | [[Category: Mueller M]] | + | [[Category: Mueller, M]] |
| + | [[Category: Anaerobic ammonium oxidation]] | ||
| + | [[Category: Anammox]] | ||
| + | [[Category: Oxidoreductase]] | ||
| + | [[Category: Redox]] | ||
Revision as of 06:52, 14 April 2021
Hydroxylamine Oxidoreductase from Brocadia fulgida
| |||||||||||
