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6j6t

From Proteopedia

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Current revision (10:02, 22 November 2023) (edit) (undo)
 
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<StructureSection load='6j6t' size='340' side='right'caption='[[6j6t]], [[Resolution|resolution]] 2.36&Aring;' scene=''>
<StructureSection load='6j6t' size='340' side='right'caption='[[6j6t]], [[Resolution|resolution]] 2.36&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6j6t]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6J6T OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6J6T FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6j6t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6J6T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6J6T FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.36&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HDA15, At3g18520, MYF24_23 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histone_deacetylase Histone deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.98 3.5.1.98] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6j6t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6j6t OCA], [https://pdbe.org/6j6t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6j6t RCSB], [https://www.ebi.ac.uk/pdbsum/6j6t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6j6t ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6j6t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6j6t OCA], [http://pdbe.org/6j6t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6j6t RCSB], [http://www.ebi.ac.uk/pdbsum/6j6t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6j6t ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/HDA15_ARATH HDA15_ARATH]] Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity).
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[https://www.uniprot.org/uniprot/HDA15_ARATH HDA15_ARATH] Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Arath]]
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[[Category: Arabidopsis thaliana]]
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[[Category: Histone deacetylase]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Cheng, Y S]]
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[[Category: Cheng YS]]
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[[Category: Hsu, J C]]
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[[Category: Hsu JC]]
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[[Category: Hung, H C]]
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[[Category: Hung HC]]
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[[Category: Liu, T C]]
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[[Category: Liu TC]]
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[[Category: Arabidopsis]]
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[[Category: Gene regulation]]
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Current revision

Crystal Structure of HDA15 HD domain

PDB ID 6j6t

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