This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1e5i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:53, 13 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1e5i' size='340' side='right'caption='[[1e5i]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='1e5i' size='340' side='right'caption='[[1e5i]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1e5i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/As_4.1611 As 4.1611]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E5I OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1E5I FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1e5i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_clavuligerus Streptomyces clavuligerus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E5I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E5I FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1rxg|1rxg]], [[1rxf|1rxf]], [[1dcs|1dcs]], [[1e5h|1e5h]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CEFE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1901 AS 4.1611])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e5i OCA], [https://pdbe.org/1e5i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e5i RCSB], [https://www.ebi.ac.uk/pdbsum/1e5i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e5i ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deacetoxycephalosporin-C_synthase Deacetoxycephalosporin-C synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.20.1 1.14.20.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1e5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e5i OCA], [http://pdbe.org/1e5i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1e5i RCSB], [http://www.ebi.ac.uk/pdbsum/1e5i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1e5i ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CEFE_STRC2 CEFE_STRC2]] Catalyzes the step from penicillin N to deacetoxy-cephalosporin C.
+
[https://www.uniprot.org/uniprot/CEFE_STRCL CEFE_STRCL] Catalyzes the step from penicillin N to deacetoxy-cephalosporin C.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: As 4 1611]]
 
-
[[Category: Deacetoxycephalosporin-C synthase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Baldwin, J E]]
+
[[Category: Streptomyces clavuligerus]]
-
[[Category: Clifton, I J]]
+
[[Category: Baldwin JE]]
-
[[Category: Harlos, K]]
+
[[Category: Clifton IJ]]
-
[[Category: Lee, H J]]
+
[[Category: Harlos K]]
-
[[Category: Lloyd, M D]]
+
[[Category: Lee HJ]]
-
[[Category: Schofield, C J]]
+
[[Category: Lloyd MD]]
-
[[Category: 2-oxoglutarate]]
+
[[Category: Schofield CJ]]
-
[[Category: C-terminus antibiotic]]
+
-
[[Category: Cephalosporin]]
+
-
[[Category: Ferrous oxygenase]]
+
-
[[Category: Oxidative coupling control]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

DELTA-R306 DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH IRON AND 2-OXOGLUTARATE.

PDB ID 1e5i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools