Hypoxia-Inducible Factors

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==Clinical Significance==
==Clinical Significance==
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METER FRASE INTRODUCTORIA AQUI
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HIFs are involved in many pathologies that involve adaptations to reduced nutrient supply or oxygen availability. In some cases, like in ischemia or stroke, HIF activation can lead to a better cell survival and adaptation, while in pathologies such as cancer, tumoral cells take advantage of HIF properties to enhance their survival inside the body. For this reason, seek of compounds able to modulate HIF activity in both ways has been an active field of research for the past decades.
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===HIF activators===
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===HIF activators===
Due to the protective role of HIF, therapies based on small-molecules that stabilize HIF-α have attracted a lot of attention. In pathologies such as ischemia or [https://en.wikipedia.org/wiki/Stroke stroke], HIF activation could help to reduce the damage done by the lack of oxygen and restore tissue functionality. This objective can be achieved by two different ways: inhibition of HIF-PHD pathway or without the inhibition of PHDs <ref>PMID: 30671433</ref>.
Due to the protective role of HIF, therapies based on small-molecules that stabilize HIF-α have attracted a lot of attention. In pathologies such as ischemia or [https://en.wikipedia.org/wiki/Stroke stroke], HIF activation could help to reduce the damage done by the lack of oxygen and restore tissue functionality. This objective can be achieved by two different ways: inhibition of HIF-PHD pathway or without the inhibition of PHDs <ref>PMID: 30671433</ref>.
====HIF-1α Upregulation via Inhibition of PHD Pathway====
====HIF-1α Upregulation via Inhibition of PHD Pathway====
This group includes the majority of HIF-1α upregulators. PHDs inhibition can be achieved through different interventions:
This group includes the majority of HIF-1α upregulators. PHDs inhibition can be achieved through different interventions:
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=====Iron chelators and competitors=====
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*Iron chelators and competitors: Iron chelators reduce the number of free iron (Fe2+) by binding tightly to it. In this way, PHD enzymes do not have enough available iron to carry out the hydroxylation reaction and the expression of HIF-1α is upregulated. Also, iron competitors such as Co2+ or Mn2+ can be used <ref>PMID: 30671433</ref>. [https://en.wikipedia.org/wiki/Deferoxamine '''Deferoxamine (DFO)'''] and [https://en.wikipedia.org/wiki/Mimosine '''mimosine'''] were the first iron chelators to mediate HIF-1α neuroprotection. Pre-treatment with DFO protected neurons from oxidative stress-induced death by inhibiting PHDs, therefore increasing mRNA and protein expression of both HIF-1α and its controlled genes <ref>PMID: 10559391</ref>. [https://en.wikipedia.org/wiki/2,2%E2%80%B2-Bipyridine '''2,2-dipyridyl'''] ('''DP''') is a liposoluble iron chelator that upregulates HIF-1α expression. Treatment with this drug decreased expansion of tissue damage after ischemia and protected neurons and endothelial cells by decreasing the amount of [https://en.wikipedia.org/wiki/Reactive_oxygen_species '''reactive oxygen species'''] ('''ROS''') <ref>PMID: 15280435</ref>.
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Iron chelators reduce the number of free iron (Fe2+) by binding tightly to it. In this way, PHD enzymes do not have enough available iron to carry out the hydroxylation reaction and the expression of HIF-1α is upregulated. Also, iron competitors such as Co2+ or Mn2+ can be used <ref>PMID: 30671433</ref>. [https://en.wikipedia.org/wiki/Deferoxamine '''Deferoxamine (DFO)'''] and [https://en.wikipedia.org/wiki/Mimosine '''mimosine'''] were the first iron chelators to mediate HIF-1α neuroprotection. Pre-treatment with DFO protected neurons from oxidative stress-induced death by inhibiting PHDs, therefore increasing mRNA and protein expression of both HIF-1α and its controlled genes <ref>PMID: 10559391</ref>. [https://en.wikipedia.org/wiki/2,2%E2%80%B2-Bipyridine '''2,2-dipyridyl'''] ('''DP''') is a liposoluble iron chelator that upregulates HIF-1α expression. Treatment with this drug decreased expansion of tissue damage after ischemia and protected neurons and endothelial cells by decreasing the amount of [https://en.wikipedia.org/wiki/Reactive_oxygen_species '''reactive oxygen species'''] ('''ROS''') <ref>PMID: 15280435</ref>.
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*[https://en.wikipedia.org/wiki/Alpha-Ketoglutaric_acid '''2-oxoglutarate''']: is a required co-substrate for the hydroxylation reaction by PHDs. So, compounds such as hydroxybenzenes or their analogous can inhibit PHD action to stabilize HIF-1α an allow gene expression of its targets. [https://pubchem.ncbi.nlm.nih.gov/compound/Dimethyloxalylglycine#section=2D-Structure '''Dimethyloxalylglycine'''] ('''DMOG''') is a cell permeable ester that prevents HIF-1α degradation and increases VEGF levels in ischemic neurons. Studies in animal stroke models showed reduced ischemic injury in neurons and a lower degree of damage <ref>PMID: 20407463</ref>.
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=====2-oxoglutarate analogs=====
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*Alternative mechanism of action: Instead of sequestering Fe2+ ions or mimicking 2-oxoglutarate binding, some molecules can bind directly into the active site of PHDs. '''FG-4497''' is a PHD inhibitor that stabilizes HIF-1α and upregulates VEGF and EPO in murine cell lines. It has also been shown to enhance cell survival following oxygen-glucose deprivation. Indeed, intraperitoneal administration of FG-4497 can reduce infarct size<ref>PMID: 24409307</ref>. On the other hand, [https://en.wikipedia.org/wiki/Folate '''Folic acid'''] ('''FA''') can directly inhibit PHD2, FIH-1 and pVHL. Post-ischemic ''in vivo'' treatments showed that FA upregulated HIF-1α and its target genes<ref>PMID: 29542054</ref>.
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[https://en.wikipedia.org/wiki/Alpha-Ketoglutaric_acid '''2-oxoglutarate'''] is also a required co-substrate for the hydroxylation reaction by PHDs. So, compounds such as hydroxybenzenes or their analogous can inhibit PHD action to stabilize HIF-1α an allow gene expression of its targets. [https://pubchem.ncbi.nlm.nih.gov/compound/Dimethyloxalylglycine#section=2D-Structure '''Dimethyloxalylglycine'''] ('''DMOG''') is a cell permeable ester that prevents HIF-1α degradation and increases VEGF levels in ischemic neurons. Studies in animal stroke models showed reduced ischemic injury in neurons and a lower degree of damage <ref>PMID: 20407463</ref>.
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=====Alternative mechanism of action=====
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Instead of sequestering Fe2+ ions or mimicking 2-oxoglutarate binding, some molecules can bind directly into the active site of PHDs. '''FG-4497''' is a PHD inhibitor that stabilizes HIF-1α and upregulates VEGF and EPO in murine cell lines. It has also been shown to enhance cell survival following oxygen-glucose deprivation. Indeed, intraperitoneal administration of FG-4497 can reduce infarct size<ref>PMID: 24409307</ref>. On the other hand, [https://en.wikipedia.org/wiki/Folate '''Folic acid'''] ('''FA''') can directly inhibit PHD2, FIH-1 and pVHL. Post-ischemic ''in vivo'' treatments showed that FA upregulated HIF-1α and its target genes<ref>PMID: 29542054</ref>.
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====HIF-1α Upregulation Without the Inhibition of PHDs====
====HIF-1α Upregulation Without the Inhibition of PHDs====
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====Direct HIF inhibitors====
====Direct HIF inhibitors====
=====Inhibitors of HIF-1 dimerization=====
=====Inhibitors of HIF-1 dimerization=====
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*[https://pubchem.ncbi.nlm.nih.gov/compound/PT-2385-_R-enantiomer '''PT2385'''] and [https://pubchem.ncbi.nlm.nih.gov/compound/91663289 '''PT2399'''] are recently discovered small molecules and selective HIF-2α inhibitors that bind to the HIF-1β hydrophobic pocket and allosterically block its dimerization with HIF-2α (see below).
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*[https://pubchem.ncbi.nlm.nih.gov/compound/PT-2385-_R-enantiomer '''PT2385'''] and [https://pubchem.ncbi.nlm.nih.gov/compound/91663289 '''PT2399'''] are recently discovered small molecules and selective HIF-2α inhibitors that bind to the HIF-1β hydrophobic pocket and allosterically block its dimerization with HIF-2α (see more in [[#Cancer|Cancer]]).
*[https://en.wikipedia.org/wiki/Acriflavine '''Acriflavine'''] is a mixture of trypaflavin (3,6-diamino-10-methylacridinium chloride) and proflavine (3,6-diaminoacridine), which has trypanocidal, antibacterial, and antiviral activities. Acriflavine is also a HIF inhibitor that acts through inhibition of HIF-1 dimerization by binding to the PAS-B subdomain of HIF-1α and HIF-2α<ref>PMID: 19805192</ref>. This agent has demonstrated highly promising antitumor activity against a wide spectrum of cancers, including colorectal, hepatocellular, and ovarian cancer cell lines, and more recently in malignant brain cancer both ''in vitro'' and ''in vivo''<ref>PMID: 29097800</ref>. Its promising safety profile and characteristic ability of binding to both HIF-1α and HIF-2α subunits makes it a promising candidate for clinical evaluation.
*[https://en.wikipedia.org/wiki/Acriflavine '''Acriflavine'''] is a mixture of trypaflavin (3,6-diamino-10-methylacridinium chloride) and proflavine (3,6-diaminoacridine), which has trypanocidal, antibacterial, and antiviral activities. Acriflavine is also a HIF inhibitor that acts through inhibition of HIF-1 dimerization by binding to the PAS-B subdomain of HIF-1α and HIF-2α<ref>PMID: 19805192</ref>. This agent has demonstrated highly promising antitumor activity against a wide spectrum of cancers, including colorectal, hepatocellular, and ovarian cancer cell lines, and more recently in malignant brain cancer both ''in vitro'' and ''in vivo''<ref>PMID: 29097800</ref>. Its promising safety profile and characteristic ability of binding to both HIF-1α and HIF-2α subunits makes it a promising candidate for clinical evaluation.
=====Inhibitors of HIF-1 transcriptional activity=====
=====Inhibitors of HIF-1 transcriptional activity=====
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=====Inhibitors of HIF-1/DNA binding=====
=====Inhibitors of HIF-1/DNA binding=====
[https://pubchem.ncbi.nlm.nih.gov/compound/Echinomycin '''Echinomycin'''] is a natural cyclic peptide that belongs to the quinoxaline antibiotic family. It also acts as a HIF-1 inhibitor by specifically binding to the core of its recognition sequence, impeding HIF-1 to bind to its target DNA sequence<ref>PMID: 16204079</ref>. Although it demonstrated antitumor activity in preclinical studies, no significant antitumoral activity was observed in clinical trials<ref>PMID: 16204079</ref>.
[https://pubchem.ncbi.nlm.nih.gov/compound/Echinomycin '''Echinomycin'''] is a natural cyclic peptide that belongs to the quinoxaline antibiotic family. It also acts as a HIF-1 inhibitor by specifically binding to the core of its recognition sequence, impeding HIF-1 to bind to its target DNA sequence<ref>PMID: 16204079</ref>. Although it demonstrated antitumor activity in preclinical studies, no significant antitumoral activity was observed in clinical trials<ref>PMID: 16204079</ref>.
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===Stroke===
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===Cancer===

Revision as of 17:32, 24 November 2020

Crystal structure of N-terminal HIF-2α/HIF-1β Complex with HRE DNA (PDB code 4ZPK)

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