This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6zj6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:53, 1 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6zj6' size='340' side='right'caption='[[6zj6]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
<StructureSection load='6zj6' size='340' side='right'caption='[[6zj6]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6zj6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_sp._xb1a Bacteroides sp. xb1a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6ZJ6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6zj6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_xylanisolvens_XB1A Bacteroides xylanisolvens XB1A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZJ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZJ6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=IFM:5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE'>IFM</scene>, <scene name='pdbligand=QTE:methylcyclohexane'>QTE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.09&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6zdc|6zdc]], [[6zdf|6zdf]], [[6zdk|6zdk]], [[6zdl|6zdl]], [[6zfa|6zfa]], [[6zfq|6zfq]], [[6zfn|6zfn]], [[6zj5|6zj5]], [[6zj1|6zj1]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=IFM:5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE'>IFM</scene>, <scene name='pdbligand=QTE:methylcyclohexane'>QTE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BXY_34140 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=657309 Bacteroides sp. XB1A])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zj6 OCA], [https://pdbe.org/6zj6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zj6 RCSB], [https://www.ebi.ac.uk/pdbsum/6zj6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zj6 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6zj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zj6 OCA], [http://pdbe.org/6zj6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6zj6 RCSB], [http://www.ebi.ac.uk/pdbsum/6zj6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6zj6 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/D6D1V7_9BACE D6D1V7_9BACE]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacteroides sp. xb1a]]
+
[[Category: Bacteroides xylanisolvens XB1A]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Alonzi, D S]]
+
[[Category: Alonzi DS]]
-
[[Category: Butters, T D]]
+
[[Category: Butters TD]]
-
[[Category: Davies, G J]]
+
[[Category: Davies GJ]]
-
[[Category: Davies, S]]
+
[[Category: Davies S]]
-
[[Category: Fernandes, P Z]]
+
[[Category: Fernandes PZ]]
-
[[Category: Hakki, Z]]
+
[[Category: Hakki Z]]
-
[[Category: Hill, M]]
+
[[Category: Hill M]]
-
[[Category: Howe, J D]]
+
[[Category: Howe JD]]
-
[[Category: Sobala, L F]]
+
[[Category: Sobala LF]]
-
[[Category: Stamataki, Z]]
+
[[Category: Stamataki Z]]
-
[[Category: Thompson, A J]]
+
[[Category: Thompson AJ]]
-
[[Category: Williams, S J]]
+
[[Category: Williams SJ]]
-
[[Category: Zitzmann, N]]
+
[[Category: Zitzmann N]]
-
[[Category: Hydrolase]]
+
-
[[Category: Mannosidase]]
+
-
[[Category: Retaining]]
+

Current revision

Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with cyclohexylmethyl-Glc-1,3-isofagomine

PDB ID 6zj6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools