1n5t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:53, 14 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1n5t' size='340' side='right'caption='[[1n5t]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='1n5t' size='340' side='right'caption='[[1n5t]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1n5t]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Strco Strco]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N5T OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1N5T FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1n5t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor_A3(2) Streptomyces coelicolor A3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N5T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N5T FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OAL:(1,8-DIHYDROXY-9,10-DIOXO-9,10-DIHYDRO-ANTHRACEN-2-YL)-ACETIC+ACID'>OAL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1lq9|1lq9]], [[1n5q|1n5q]], [[1n5s|1n5s]], [[1n5v|1n5v]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OAL:(1,8-DIHYDROXY-9,10-DIOXO-9,10-DIHYDRO-ANTHRACEN-2-YL)-ACETIC+ACID'>OAL</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ActVA-Orf6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n5t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n5t OCA], [https://pdbe.org/1n5t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n5t RCSB], [https://www.ebi.ac.uk/pdbsum/1n5t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n5t ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1n5t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n5t OCA], [http://pdbe.org/1n5t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n5t RCSB], [http://www.ebi.ac.uk/pdbsum/1n5t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1n5t ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q53908_STRCH Q53908_STRCH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n5t ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n5t ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
ActVA-Orf6 monooxygenase from Streptomyces coelicolor that catalyses the oxidation of an aromatic intermediate of the actinorhodin biosynthetic pathway is a member of a class of small monooxygenases that carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The overall structure is a ferredoxin-like fold with a novel dimeric assembly, indicating that the widely represented ferredoxin fold may sustain yet another functionality. The resolution (1.3 A) of the enzyme structure and its complex with substrate and product analogues allows us to visualize the mechanism of binding and activation of the substrate for attack by molecular oxygen, and utilization of two gates for the reaction components including a proton gate and an O(2)/H(2)O gate with a putative protein channel. This is the first crystal structure of an enzyme involved in the tailoring of a type II aromatic polyketide and illustrates some of the enzyme-substrate recognition features that may apply to a range of other enzymes involved in modifying a polyketide core structure.
 
- 
-
The structure of ActVA-Orf6, a novel type of monooxygenase involved in actinorhodin biosynthesis.,Sciara G, Kendrew SG, Miele AE, Marsh NG, Federici L, Malatesta F, Schimperna G, Savino C, Vallone B EMBO J. 2003 Jan 15;22(2):205-15. PMID:12514126<ref>PMID:12514126</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 1n5t" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Monooxygenase 3D structures|Monooxygenase 3D structures]]
*[[Monooxygenase 3D structures|Monooxygenase 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Strco]]
+
[[Category: Federici L]]
-
[[Category: Federici, L]]
+
[[Category: G Kendrew S]]
-
[[Category: Kendrew, S G]]
+
[[Category: Malatesta F]]
-
[[Category: Malatesta, F]]
+
[[Category: Marsh NG]]
-
[[Category: Marsh, N G]]
+
[[Category: Miele AE]]
-
[[Category: Miele, A E]]
+
[[Category: Savino C]]
-
[[Category: Savino, C]]
+
[[Category: Schimperna G]]
-
[[Category: Schimperna, G]]
+
[[Category: Sciara G]]
-
[[Category: Sciara, G]]
+
[[Category: Vallone B]]
-
[[Category: Vallone, B]]
+
-
[[Category: Actinorhodin]]
+
-
[[Category: Aromatic polyketide]]
+
-
[[Category: Dihydrokalafungin]]
+
-
[[Category: Monooxygenase]]
+
-
[[Category: Oxidized acetyl dithranol]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Streptomyces coelicolor]]
+

Current revision

Crystal structure of a Monooxygenase from the gene ActVA-Orf6 of Streptomyces coelicolor in complex with the ligand Oxidized Acetyl Dithranol

PDB ID 1n5t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools