This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1nmn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:57, 14 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1nmn' size='340' side='right'caption='[[1nmn]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='1nmn' size='340' side='right'caption='[[1nmn]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1nmn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NMN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1NMN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1nmn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NMN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NMN FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YQGF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1nmn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nmn OCA], [http://pdbe.org/1nmn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1nmn RCSB], [http://www.ebi.ac.uk/pdbsum/1nmn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1nmn ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nmn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nmn OCA], [https://pdbe.org/1nmn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nmn RCSB], [https://www.ebi.ac.uk/pdbsum/1nmn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nmn ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RUVX_ECOLI RUVX_ECOLI]] Could be a nuclease that resolves Holliday junction intermediates in genetic recombination.<ref>PMID:10982859</ref>
+
[https://www.uniprot.org/uniprot/YQGF_ECOLI YQGF_ECOLI] Involved in the processing of the 5'-end of pre-16S rRNA during 70S ribosome maturation (processing does not occur on total cellular RNA off the ribosome); may be a nuclease (PubMed:25545592). A temperature-sensitive yqgF mutant no longer grows when Rho or NusA are overproduced, and has reduced transcription of genes encoded downstream of Rho terminators; transcription increases again in the presence of the Rho inhibitor bicylomycin (PubMed:22353788).<ref>PMID:22353788</ref> <ref>PMID:25545592</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Galkin, A]]
+
[[Category: Galkin A]]
-
[[Category: Herzberg, O]]
+
[[Category: Herzberg O]]
-
[[Category: Howard, A]]
+
[[Category: Howard A]]
-
[[Category: Krajewski, W]]
+
[[Category: Krajewski W]]
-
[[Category: S2F, Structure 2.Function Project]]
+
[[Category: Sarikaya E]]
-
[[Category: Sarikaya, E]]
+
-
[[Category: Hypothetical protein]]
+
-
[[Category: S2f]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Structure 2 function project]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Yqgf]]
+

Current revision

Structure of yqgF from Escherichia coli, a hypothetical protein

PDB ID 1nmn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools