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Transcription initiation factors 3D structures
From Proteopedia
(Difference between revisions)
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**[[5fur]] – hTFIIA + hTFIIF + TBP + DNA - CryoEM<br /> | **[[5fur]] – hTFIIA + hTFIIF + TBP + DNA - CryoEM<br /> | ||
**[[1ytf]], [[1nh2]], [[1rm1]] – yTFIIA + TBP + DNA – yeast<br /> | **[[1ytf]], [[1nh2]], [[1rm1]] – yTFIIA + TBP + DNA – yeast<br /> | ||
| + | **[[7oh9]], [[7oha]] – yTFIIA in nucleosome complex - CryoEM<br /> | ||
*TFIIB | *TFIIB | ||
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**[[5n9g]] – hTFIIIB + TBP + DNA<br /> | **[[5n9g]] – hTFIIIB + TBP + DNA<br /> | ||
**[[6f44]], [[6f42]], [[6f41]], [[6f40]], [[6eu0]], [[6cnf]], [[6cnd]], [[6cnc]], [[6cnb]] – yTFIIIB + RNA polymerase III – Cryo EM<br /> | **[[6f44]], [[6f42]], [[6f41]], [[6f40]], [[6eu0]], [[6cnf]], [[6cnd]], [[6cnc]], [[6cnb]] – yTFIIIB + RNA polymerase III – Cryo EM<br /> | ||
| + | **[[7q5b]] – yTFIIIB in TY3 retrotransposon complex – Cryo EM<br /> | ||
*TFIIIC see [[Transcription factor tau]] | *TFIIIC see [[Transcription factor tau]] | ||
| Line 37: | Line 39: | ||
**[[1bh8]] – hTFIID<BR /> | **[[1bh8]] – hTFIID<BR /> | ||
| - | **[[1eqf]] – hTFIID subunit 1<br /> | + | **[[1eqf]], [[7k3o]] – hTFIID subunit 1<br /> |
| - | **[[6fic]] – hTFIID subunit 1 + inhibitor<br /> | + | **[[6fic]], [[7jjg]], [[7jjh]], [[7jsp]], [[7jtc]], [[7k03]], [[7k0d]], [[7k0u]], [[7k1p]], [[7k27]], [[7k42]], [[7k6f]], [[7l6x]], [[7lb0]], [[7lb1]], [[7lb2]], [[7lb3]], [[7n42]], [[7p4s]], [[7t2i]], [[7t36]] – hTFIID subunit 1 + inhibitor<br /> |
**[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br /> | **[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br /> | ||
**[[3uv4]] – hTFIID subunit 1 bromodomain 2 1501-1635<br /> | **[[3uv4]] – hTFIID subunit 1 bromodomain 2 1501-1635<br /> | ||
| Line 51: | Line 53: | ||
**[[4grw]] - hTFIID subunits 1+7 <br /> | **[[4grw]] - hTFIID subunits 1+7 <br /> | ||
**[[6f3t]] - hTFIID subunits 5+6+9 <br /> | **[[6f3t]] - hTFIID subunits 5+6+9 <br /> | ||
| - | **[[6mzl]] - hTFIID subunits 1-13 + TBP – Cryo EM<br /> | + | **[[6mzl]], [[7eg9]], [[7egb]], [[7egc]], [[7ege]], [[7ena]], [[7enc]] - hTFIID subunits 1-13 + TBP – Cryo EM<br /> |
| - | **[[6mzd]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br /> | + | **[[6mzd]], [[7egf]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br /> |
| - | **[[6mzc]] - hTFIID subunits 2,4-6,8-12 – Cryo EM<br /> | + | **[[6mzc]], [[7egg]] - hTFIID subunits 2,4-6,8-12 – Cryo EM<br /> |
| + | **[[7egh]] - hTFIID subunits 1,2,6-8 + DNA – Cryo EM<br /> | ||
| + | **[[7ktr]], [[7kts]] - hTFIID in SAGA coactivator complex – Cryo EM<br />At | ||
**[[1bh9]] – hTFIID + PCMBS<BR /> | **[[1bh9]] – hTFIID + PCMBS<BR /> | ||
**[[6df7]], [[6df4]] – TFIID subunit 1 bromodomain 2 + inhibitor - rabbit<br /> | **[[6df7]], [[6df4]] – TFIID subunit 1 bromodomain 2 + inhibitor - rabbit<br /> | ||
**[[1tba]] – TFIID – ''Drosophila melanogaster'' - NMR<BR /> | **[[1tba]] – TFIID – ''Drosophila melanogaster'' - NMR<BR /> | ||
**[[1qn3]], [[1qn4]], [[1qn5]], [[1qn6]], [[1qn7]], [[1qn8]], [[1qn9]], [[1qna]], [[1qnb]], [[1qnc]], [[1qne]] – TFIID + DNA – ''Arabidopsis thaliana''<br /> | **[[1qn3]], [[1qn4]], [[1qn5]], [[1qn6]], [[1qn7]], [[1qn8]], [[1qn9]], [[1qna]], [[1qnb]], [[1qnc]], [[1qne]] – TFIID + DNA – ''Arabidopsis thaliana''<br /> | ||
| + | **[[7ac1]] - AtTFIID subunit 4 RST domain - NMR<br /> | ||
**[[4oy2]] - yTFIID subunits 1+7 <br /> | **[[4oy2]] - yTFIID subunits 1+7 <br /> | ||
**[[6mip]] - yTFIID subunits 14 <br /> | **[[6mip]] - yTFIID subunits 14 <br /> | ||
**[[6lqz]] - yTFIID subunit 14 + STH1EBMC - NMR<br /> | **[[6lqz]] - yTFIID subunit 14 + STH1EBMC - NMR<br /> | ||
| - | **[[5iok]], [[5d7e]], [[6miq]], [[6mio]], [[6min]] – yTFIID subunit 14 YEATS domain 1-137 + histone peptide<br /> | + | **[[5iok]], [[5d7e]], [[6miq]], [[6mio]], [[6min]], [[7f4a]] – yTFIID subunit 14 YEATS domain 1-137 + histone peptide<br /> |
**[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br /> | **[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br /> | ||
**[[6t9k]], [[6t9i]] - yTFIID in SAGA complex – Cryo EM <br /> | **[[6t9k]], [[6t9i]] - yTFIID in SAGA complex – Cryo EM <br /> | ||
**[[6tbm]], [[6tb4]], [[6hqa]] - TFIID in SAGA complex – ''Komagataella phaffii'' – Cryo EM <br /> | **[[6tbm]], [[6tb4]], [[6hqa]] - TFIID in SAGA complex – ''Komagataella phaffii'' – Cryo EM <br /> | ||
| + | |||
| + | *TFIID+TFIIA | ||
| + | |||
| + | **[[7egd]], [[7egi]], [[7egj]] – hTFIID+TFIIA + TBP + DNA – Cryo EM<br /> | ||
*TFIIE | *TFIIE | ||
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**[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br /> | **[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br /> | ||
**[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br /> | **[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br /> | ||
| + | **[[7mei]], [[7mk9]] – yTFIIH in trailing EC complex – Cryo EM<br /> | ||
*TFIIH | *TFIIH | ||
| - | **[[5ivw]], [[6o9m]] – hTFIIH in preinitiation complex – Cryo EM<br /> | + | **[[5ivw]], [[6o9m]], [[7o4k]], [[7o4l]] – hTFIIH in preinitiation complex – Cryo EM<br /> |
*TF in RNA polymerase II | *TF in RNA polymerase II | ||
**[[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hTFIIA + hTFIIB + hTFIIE + hTFIIF + hTFIIH + DNA – Cryo EM<br /> | **[[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hTFIIA + hTFIIB + hTFIIE + hTFIIF + hTFIIH + DNA – Cryo EM<br /> | ||
| + | **[[7edx]], [[7eg7]], [[7eg8]], [[7eg9]], [[7ega]], [[7nvv]], [[7nvy]], [[7nvz]], [[7nw0]] – hTFII in RNA polymerase – Cryo EM<br /> | ||
**[[5fyw]] – yTFIIA + yTFIIE + yTFIIF + DNA <br /> | **[[5fyw]] – yTFIIA + yTFIIE + yTFIIF + DNA <br /> | ||
**[[5fz5]], [[6gym]], [[6gyl]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br /> | **[[5fz5]], [[6gym]], [[6gyl]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br /> | ||
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*TF RRN or RNA polymerase I-specific transcription initiation factor RRN | *TF RRN or RNA polymerase I-specific transcription initiation factor RRN | ||
| + | **[[7oba]] – hTF RRN3 in RNA polymerase I – Cryo EM<br /> | ||
**[[3tj1]] – yTF RRN3 <br /> | **[[3tj1]] – yTF RRN3 <br /> | ||
**[[5g5l]] – yTF RRN3 in RNA polymerase I<br /> | **[[5g5l]] – yTF RRN3 in RNA polymerase I<br /> | ||
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**[[5w66]], [[5w65]], [[5w64]], [[5w5y]], [[5oa1]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br /> | **[[5w66]], [[5w65]], [[5w64]], [[5w5y]], [[5oa1]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br /> | ||
**[[6rwe]], [[6rui]], [[6rql]], [[6rqh]], [[5n61]], [[5n60]], [[5n5z]], [[5n5y]] – yTF RRN3+RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br /> | **[[6rwe]], [[6rui]], [[6rql]], [[6rqh]], [[5n61]], [[5n60]], [[5n5z]], [[5n5y]] – yTF RRN3+RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br /> | ||
| - | + | **[[7z0o]] – yTF RRN5+RRN9+RRN10 in RNA polymerase I – Cryo EM<br /> | |
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 09:41, 28 April 2022
3D structures of transcription initiation factors
Updated on 28-April-2022 - For a general description of the protein see Transcription initiation factor
