This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1qrj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:06, 17 April 2024) (edit) (undo)
 
Line 1: Line 1:
==Solution structure of htlv-i capsid protein==
==Solution structure of htlv-i capsid protein==
-
<StructureSection load='1qrj' size='340' side='right'caption='[[1qrj]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='1qrj' size='340' side='right'caption='[[1qrj]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Htl1a Htl1a]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1qrj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_T-cell_lymphotrophic_virus_type_1_(strain_ATK) Human T-cell lymphotrophic virus type 1 (strain ATK)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QRJ FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GAG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11926 HTL1A])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [http://pdbe.org/1qrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [http://www.ebi.ac.uk/pdbsum/1qrj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1qrj ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qrj OCA], [https://pdbe.org/1qrj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qrj RCSB], [https://www.ebi.ac.uk/pdbsum/1qrj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qrj ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GAG_HTL1A GAG_HTL1A]] Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).
+
[https://www.uniprot.org/uniprot/GAG_HTL1A GAG_HTL1A] Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 24: Line 24:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Htl1a]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Campos-Olivas, R]]
+
[[Category: Campos-Olivas R]]
-
[[Category: Clark, C A]]
+
[[Category: Clark CA]]
-
[[Category: Khorasanizadeh, S]]
+
[[Category: Khorasanizadeh S]]
-
[[Category: Summers, M F]]
+
[[Category: Summers MF]]
-
[[Category: Alpha helical protein]]
+
-
[[Category: Capsid protein]]
+
-
[[Category: Heteronuclear nmr spectroscopy]]
+
-
[[Category: Htlv-i]]
+
-
[[Category: Retrovirus]]
+
-
[[Category: Two-domain protein]]
+
-
[[Category: Viral protein]]
+
-
[[Category: Virus/viral protein]]
+

Current revision

Solution structure of htlv-i capsid protein

PDB ID 1qrj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools