1rkq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:23, 14 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1rkq' size='340' side='right'caption='[[1rkq]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
<StructureSection load='1rkq' size='340' side='right'caption='[[1rkq]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1rkq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RKQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1RKQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1rkq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RKQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YIDA, B3697, C4619, SF3767, S4004 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1rkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rkq OCA], [http://pdbe.org/1rkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rkq RCSB], [http://www.ebi.ac.uk/pdbsum/1rkq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rkq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1rkq TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rkq OCA], [https://pdbe.org/1rkq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rkq RCSB], [https://www.ebi.ac.uk/pdbsum/1rkq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rkq ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1rkq TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/YIDA_ECOLI YIDA_ECOLI]] Catalyzes the dephosphorylation of different sugar phosphates including erythrose-4-phosphate (Ery4P), ribose-5-phosphate (Ribu5P), fructose-1-phosphate (Fru1P), fructose-6-phosphate (Fru6P), glucose-6-P (Glu6P), and also imidodiphosphate (Imido-di-P) and acetyl phosphate (Acetyl-P). Selectively hydrolyzes alpha-D-glucose-1-phosphate (Glu1P) and has no activity with the beta form.<ref>PMID:15808744</ref> <ref>PMID:16990279</ref>
+
[https://www.uniprot.org/uniprot/YIDA_ECOLI YIDA_ECOLI] Catalyzes the dephosphorylation of different sugar phosphates including erythrose-4-phosphate (Ery4P), ribose-5-phosphate (Ribu5P), fructose-1-phosphate (Fru1P), fructose-6-phosphate (Fru6P), glucose-6-P (Glu6P), and also imidodiphosphate (Imido-di-P) and acetyl phosphate (Acetyl-P). Selectively hydrolyzes alpha-D-glucose-1-phosphate (Glu1P) and has no activity with the beta form.<ref>PMID:15808744</ref> <ref>PMID:16990279</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 24: Line 24:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Almo SC]]
-
[[Category: Burley, S K]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Ramagopal UA]]
-
[[Category: Ramagopal, U A]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Two domain structure with beta-alpha sandwich. stucture contains a magnesium ion]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of HAD-like phosphatase yidA from E. coli

PDB ID 1rkq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools