6y3d
From Proteopedia
(Difference between revisions)
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- | ==== | + | ==X-ray structure of thermophilic C-phycocyanin from Galdiera phlegrea== |
- | <StructureSection load='6y3d' size='340' side='right'caption='[[6y3d]]' scene=''> | + | <StructureSection load='6y3d' size='340' side='right'caption='[[6y3d]], [[Resolution|resolution]] 1.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[6y3d]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Cyanidium_caldarium Cyanidium caldarium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Y3D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Y3D FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6y3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6y3d OCA], [https://pdbe.org/6y3d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6y3d RCSB], [https://www.ebi.ac.uk/pdbsum/6y3d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6y3d ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/PHCA_CYACA PHCA_CYACA] Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex (phycobilisome, PBS). Phycocyanin is the major phycobiliprotein in the PBS rod. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Galdieria phlegrea is a polyextremophilic red alga belonging to Cyanidiophyceae. Galdieria phlegrea C-phycocyanin (GpPC), an abundant light-harvesting pigment with an important role in energy capture and transfer to photosystems, is the C-phycocyanin (C-PC) with the highest thermal stability described so far. GpPC also presents interesting antioxidant and anticancer activities. The X-ray structure of the protein was here solved. GpPC is a [(alphabeta)(3)](2) hexamer, with the phycocyanobilin chromophore attached to Cys84alpha, Cys82beta and Cys153beta. Details of geometry and interaction with solvent of the chromophores are reported. Comparison with the structure of a C-PC in the entire Porphyridium purpureum phycobilisome system reveals that linker polypeptides have a significant effect on the local structure of the chromophores environment. Comparative analyses with the structures of other purified C-PCs, which were carried out including re-refined models of G. sulphuraria C-PC, reveal that GpPC presents a significantly higher number of inter-trimer salt bridges. Notably, the higher number of salt bridges at the (alphabeta)(3)/(alphabeta)(3) interface is not due to an increased number of charged residues in this region, but to subtle conformational variations of their side chains, which are the result of mutations of close polar and non-polar residues. | ||
+ | |||
+ | X-ray structure of C-phycocyanin from Galdieria phlegrea: Determinants of thermostability and comparison with a C-phycocyanin in the entire phycobilisome.,Ferraro G, Imbimbo P, Marseglia A, Lucignano R, Monti DM, Merlino A Biochim Biophys Acta Bioenerg. 2020 Sep 1;1861(9):148236. doi: , 10.1016/j.bbabio.2020.148236. Epub 2020 May 30. PMID:32479753<ref>PMID:32479753</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6y3d" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Phycocyanin|Phycocyanin]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Cyanidium caldarium]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Ferraro G]] |
+ | [[Category: Lucignano R]] | ||
+ | [[Category: Marseglia A]] | ||
+ | [[Category: Merlino A]] |
Current revision
X-ray structure of thermophilic C-phycocyanin from Galdiera phlegrea
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