This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6juj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:19, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6juj' size='340' side='right'caption='[[6juj]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
<StructureSection load='6juj' size='340' side='right'caption='[[6juj]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6juj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_parvulus_t1 Achromobacter parvulus t1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JUJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6JUJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6juj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._101 Pseudomonas sp. 101]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JUJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JUJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A7R:[[(2S,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]+[(2S,3S,4R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl+hydrogen+phosphate'>A7R</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.183&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Formate_dehydrogenase Formate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.1.9 1.17.1.9] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A7R:[[(2S,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]+[(2S,3S,4R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl+hydrogen+phosphate'>A7R</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6juj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6juj OCA], [http://pdbe.org/6juj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6juj RCSB], [http://www.ebi.ac.uk/pdbsum/6juj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6juj ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6juj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6juj OCA], [https://pdbe.org/6juj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6juj RCSB], [https://www.ebi.ac.uk/pdbsum/6juj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6juj ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FDH_PSESR FDH_PSESR]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Achromobacter parvulus t1]]
 
-
[[Category: Formate dehydrogenase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Feng, Y]]
+
[[Category: Pseudomonas sp. 101]]
-
[[Category: Guo, X]]
+
[[Category: Feng Y]]
-
[[Category: Xue, S]]
+
[[Category: Guo X]]
-
[[Category: Zhao, Z]]
+
[[Category: Xue S]]
-
[[Category: Oxidoreductase]]
+
[[Category: Zhao Z]]

Current revision

Crystal structure of Formate dehydrogenase mutant V198I/C256I/P260S/E261P/S381N/S383F from Pseudomonas sp. 101in complex with non-natural cofactor Nicotinamide Cytosine Dinucleotide

PDB ID 6juj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools