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| <StructureSection load='6lk7' size='340' side='right'caption='[[6lk7]], [[Resolution|resolution]] 1.90Å' scene=''> | | <StructureSection load='6lk7' size='340' side='right'caption='[[6lk7]], [[Resolution|resolution]] 1.90Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6lk7]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._os17 Pseudomonas sp. os17]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LK7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LK7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6lk7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._Os17 Pseudomonas sp. Os17]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LK7 FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PMI18_04289, POS17_1348 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1500686 Pseudomonas sp. Os17])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.903Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6lk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lk7 OCA], [http://pdbe.org/6lk7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lk7 RCSB], [http://www.ebi.ac.uk/pdbsum/6lk7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lk7 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lk7 OCA], [https://pdbe.org/6lk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lk7 RCSB], [https://www.ebi.ac.uk/pdbsum/6lk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lk7 ProSAT]</span></td></tr> |
| </table> | | </table> |
- | <div style="background-color:#fffaf0;">
| + | == Function == |
- | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/A0A0D6BD52_9PSED A0A0D6BD52_9PSED] |
- | Many root-colonizing Pseudomonas spp. exhibiting biocontrol activities produce a wide range of secondary metabolites that exert antibiotic effects against other microbes, nematodes, and insects in the rhizosphere. The expression of these secondary metabolites depends on the Gac/Rsm signal transduction pathway. Based on the findings of a previous genomic study on newly isolated biocontrol pseudomonad strains, we herein investigated the novel gene cluster OS3, which consists of four genes (Os1348-Os1351) that are located upstream of putative efflux transporter genes (Os1352-Os1355). Os1348 was predicted to encode an 85-aa small precursor protein, the expression of which was under the control of GacA, and an X-ray structural analysis suggested that the Os1348 protein formed a dimer. The mutational loss of the Os1348 gene decreased the antibiotic activity of Pseudomonas sp. Os17 without changing its growth rate. The Os1349-1351 genes were predicted to be involved in post-translational modifications. Intracellular levels of the Os1348 protein in the deficient mutant of each gene differed from that in wild-type cells. These results suggest that Os1348 is involved in antibiotic activity and that the structure or expression of this protein is under the control of downstream gene products.
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| | | |
- | Discovery of an Antibiotic-Related Small Protein of Biocontrol Strain Pseudomonas sp. Os17 by a Genome-Mining Strategy.,Takeuchi K, Tsuchiya W, Fujimoto Z, Yamada K, Someya N, Yamazaki T Front Microbiol. 2020 Nov 26;11:605705. doi: 10.3389/fmicb.2020.605705., eCollection 2020. PMID:33324389<ref>PMID:33324389</ref>
| + | ==See Also== |
- | | + | *[[Nitrile hydratase|Nitrile hydratase]] |
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
| + | |
- | </div>
| + | |
- | <div class="pdbe-citations 6lk7" style="background-color:#fffaf0;"></div>
| + | |
- | == References == | + | |
- | <references/>
| + | |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Pseudomonas sp. os17]] | + | [[Category: Pseudomonas sp. Os17]] |
- | [[Category: Fujimoto, Z]] | + | [[Category: Fujimoto Z]] |
- | [[Category: Someya, N]] | + | [[Category: Someya N]] |
- | [[Category: Takeuchi, K]] | + | [[Category: Takeuchi K]] |
- | [[Category: Tsuchiya, W]] | + | [[Category: Tsuchiya W]] |
- | [[Category: Yamada, K]] | + | [[Category: Yamada K]] |
- | [[Category: Yamazaki, T]] | + | [[Category: Yamazaki T]] |
- | [[Category: Antibiotic-related protein]]
| + | |
- | [[Category: Unknown function]]
| + | |