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1dfm

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{{STRUCTURE_1dfm| PDB=1dfm | SCENE= }}
{{STRUCTURE_1dfm| PDB=1dfm | SCENE= }}
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'''CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER'''
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===CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER===
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==Overview==
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Restriction endonucleases are remarkably resilient to alterations in their DNA binding specificity. To understand the basis of this immutability, we have determined the crystal structure of endonuclease BglII bound to its recognition sequence (AGATCT), at 1. 5 A resolution. We compare the structure of BglII to endonuclease BamHI, which recognizes a closely related DNA site (GGATCC). We show that both enzymes share a similar alpha/beta core, but in BglII, the core is augmented by a beta-sandwich domain that encircles the DNA to provide extra specificity. Remarkably, the DNA is contorted differently in the two structures, leading to different protein-DNA contacts for even the common base pairs. Furthermore, the BglII active site contains a glutamine in place of the glutamate at the general base position in BamHI, and only a single metal is found coordinated to the putative nucleophilic water and the phosphate oxygens. This surprising diversity in structures shows that different strategies can be successful in achieving site-specific recognition and catalysis in restriction endonucleases.
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(as it appears on PubMed at http://www.pubmed.gov), where 10655616 is the PubMed ID number.
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{{ABSTRACT_PUBMED_10655616}}
==About this Structure==
==About this Structure==
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[[Category: Restriction endonuclease]]
[[Category: Restriction endonuclease]]
[[Category: Restriction enzyme]]
[[Category: Restriction enzyme]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 13:47:57 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:00:19 2008''

Revision as of 20:00, 30 June 2008

Image:1dfm.png

Template:STRUCTURE 1dfm

CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER

Template:ABSTRACT PUBMED 10655616

About this Structure

1DFM is a Single protein structure of sequence from Bacillus subtilis. Full crystallographic information is available from OCA.

Reference

Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution., Lukacs CM, Kucera R, Schildkraut I, Aggarwal AK, Nat Struct Biol. 2000 Feb;7(2):134-40. PMID:10655616

Page seeded by OCA on Mon Jun 30 23:00:19 2008

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