Sandbox Reserved 1643

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 9: Line 9:
== Applications==
== Applications==
-
Mutation of PET hydrolase
+
*Mutation of PET hydrolase
Today 349 putative PET hydrolases are identified in marine and terrestrial datasets. These PET hydrolase frequencies ranged from 0.004 to 0.92 hits/Mb and 0.0001 to 1.513 hits/Mb for marine and terrestrial datasets, respectively.[1] However, a metagenomic sample from a crude oil reservoir offered the highest rate of sequence hits, with a frequency about 1.5 hits/Mb.[1,2]
Today 349 putative PET hydrolases are identified in marine and terrestrial datasets. These PET hydrolase frequencies ranged from 0.004 to 0.92 hits/Mb and 0.0001 to 1.513 hits/Mb for marine and terrestrial datasets, respectively.[1] However, a metagenomic sample from a crude oil reservoir offered the highest rate of sequence hits, with a frequency about 1.5 hits/Mb.[1,2]
-
Degradation of PET
+
*Degradation of PET
As a polymer, PET is a complex structure with crystalline regions that feature tightly packed chains in parallel, and amorphous regions where the chains are disordered. However, PET has different degrees of crystallization: it is around 35% for bottles and textiles and 6% for PET used in packaging (PET film).The most important use of PET hydrolase is the degradation of PET. Although different mutants, none of these enzymes is able to dissolve all forms of PET. PET hydrolase enzymes preferentially degrade the regions of PET that are amorphous in nature because of the flexibility and movement of the polymer chains less restricted. To remedy this, the reaction takes place above the Tg of PET, which is the glass transition temperature: amorphous PET having a Tg of 67°C and crystalline PET having a Tg of 81°. [2]
As a polymer, PET is a complex structure with crystalline regions that feature tightly packed chains in parallel, and amorphous regions where the chains are disordered. However, PET has different degrees of crystallization: it is around 35% for bottles and textiles and 6% for PET used in packaging (PET film).The most important use of PET hydrolase is the degradation of PET. Although different mutants, none of these enzymes is able to dissolve all forms of PET. PET hydrolase enzymes preferentially degrade the regions of PET that are amorphous in nature because of the flexibility and movement of the polymer chains less restricted. To remedy this, the reaction takes place above the Tg of PET, which is the glass transition temperature: amorphous PET having a Tg of 67°C and crystalline PET having a Tg of 81°. [2]
-
Bioremediation
+
*Bioremediation
Bioremediation refers to the use of living organisms or their enzymes to detoxify or restore contaminated sites, often by directing the natural capabilities of microbes toward environmental pollutants. For example, environmental Pseudomonas isolates have been shown to degrade polyethylene by reducing the weight of high density polyethylene (HDPE) and low density polyethylene (LDPE) by 55 and 77%, respectively, following 120 days incubation. Another solution to facilitate bioremediation of ocean plastic is to use membrane-based systems featuring immobilized microbes or enzymes ( like PET hydrolase ) for plastic degradation. [2]
Bioremediation refers to the use of living organisms or their enzymes to detoxify or restore contaminated sites, often by directing the natural capabilities of microbes toward environmental pollutants. For example, environmental Pseudomonas isolates have been shown to degrade polyethylene by reducing the weight of high density polyethylene (HDPE) and low density polyethylene (LDPE) by 55 and 77%, respectively, following 120 days incubation. Another solution to facilitate bioremediation of ocean plastic is to use membrane-based systems featuring immobilized microbes or enzymes ( like PET hydrolase ) for plastic degradation. [2]
-
Biological recycling
+
*Biological recycling
In mechanical recycling, collected and sorted PET waste can be powdered before melting and reprocessing to other forms. Chemical recycling leads to degrade PET into its basic monomers which can then be repolymerized. [2] However, this method is unfavorable because mechanical recycling is much more cost effective. Moreover, chemical methods require the maintenance of high temperature and pressure as well as employing toxic reagents and several preceding unit operations. Therefore, biological recycling is emerging as a more sustainable solution as it can be done with low temperature conditions, without the use of hazardous chemicals, by using microbial catalysis of polymer bond cleavage reactions, which results in the recovery of monomers.[2] However, bio-recycling is limited by the organism used, inherent polymer properties and the choice of pre-treatment, so modifications of these factors are discussed.
In mechanical recycling, collected and sorted PET waste can be powdered before melting and reprocessing to other forms. Chemical recycling leads to degrade PET into its basic monomers which can then be repolymerized. [2] However, this method is unfavorable because mechanical recycling is much more cost effective. Moreover, chemical methods require the maintenance of high temperature and pressure as well as employing toxic reagents and several preceding unit operations. Therefore, biological recycling is emerging as a more sustainable solution as it can be done with low temperature conditions, without the use of hazardous chemicals, by using microbial catalysis of polymer bond cleavage reactions, which results in the recovery of monomers.[2] However, bio-recycling is limited by the organism used, inherent polymer properties and the choice of pre-treatment, so modifications of these factors are discussed.
-
Circular bioeconomy
+
*Circular bioeconomy
Circular economy is creating loops which feed resources back into the economy to make the same or new products. In general, the low production cost of plastic shows that the reuse does not offer an economic advantage.[2] However, a combination of biodegradation and biosynthesis, bio-based PET economy could contribute to an environmental advantage. A biotechnology leading to introduce PET hydrolase in the circular economy, will create PET waste and reduce its release into the environment. Bio-PET, which refers to a PET polymer that is at least partially derived from biological sources, can be produced through the microbial synthesis of terephthalic acid TPA and ethylene glycol EG. [1] This method could make a significant contribution to a sustainable and circular PET economy. However, some complexities are associated with biological TPA production and therefore, it is only EG that is produced biologically from renewable feedstocks to give bio-PET. [2]
Circular economy is creating loops which feed resources back into the economy to make the same or new products. In general, the low production cost of plastic shows that the reuse does not offer an economic advantage.[2] However, a combination of biodegradation and biosynthesis, bio-based PET economy could contribute to an environmental advantage. A biotechnology leading to introduce PET hydrolase in the circular economy, will create PET waste and reduce its release into the environment. Bio-PET, which refers to a PET polymer that is at least partially derived from biological sources, can be produced through the microbial synthesis of terephthalic acid TPA and ethylene glycol EG. [1] This method could make a significant contribution to a sustainable and circular PET economy. However, some complexities are associated with biological TPA production and therefore, it is only EG that is produced biologically from renewable feedstocks to give bio-PET. [2]

Revision as of 17:39, 11 January 2021

This Sandbox is Reserved from 26/11/2020, through 26/11/2021 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1643 through Sandbox Reserved 1664.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Your Heading Here (maybe something like 'Structure')

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
Personal tools