1z56

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Current revision (09:02, 14 February 2024) (edit) (undo)
 
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<StructureSection load='1z56' size='340' side='right'caption='[[1z56]], [[Resolution|resolution]] 3.92&Aring;' scene=''>
<StructureSection load='1z56' size='340' side='right'caption='[[1z56]], [[Resolution|resolution]] 3.92&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1z56]] is a 11 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z56 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Z56 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1z56]] is a 11 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z56 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z56 FirstGlance]. <br>
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.92&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LIF1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824]), DNL4, LIG4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z56 OCA], [https://pdbe.org/1z56 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z56 RCSB], [https://www.ebi.ac.uk/pdbsum/1z56 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z56 ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_ligase_(ATP) DNA ligase (ATP)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.5.1.1 6.5.1.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1z56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z56 OCA], [http://pdbe.org/1z56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z56 RCSB], [http://www.ebi.ac.uk/pdbsum/1z56 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1z56 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/DNLI4_YEAST DNLI4_YEAST]] Has minor DNA joining activity. Can act on oligo(PDT)/poly(rA) substrate. [[http://www.uniprot.org/uniprot/LIF1_YEAST LIF1_YEAST]] Stabilizes DNL4. Involved in non-homologous repair of DNA double-strand breaks.<ref>PMID:9670033</ref>
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[https://www.uniprot.org/uniprot/DNLI4_YEAST DNLI4_YEAST] Has minor DNA joining activity. Can act on oligo(PDT)/poly(rA) substrate.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z56 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z56 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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DNA ligase IV catalyses the final ligation step in the non-homologous end-joining (NHEJ) DNA repair pathway and requires interaction of the ligase with the Xrcc4 'genome-guardian', an essential NHEJ factor. Here we report the 3.9 A crystal structure of the Saccharomyces cerevisiae Xrcc4 ortholog ligase interacting factor 1 (Lif1p) complexed with the C-terminal BRCT domains of DNA ligase IV (Lig4p). The structure reveals a novel mode of protein recognition by a tandem BRCT repeat, and in addition provides a molecular basis for a human LIG4 syndrome clinical condition.
 
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Structure of an Xrcc4-DNA ligase IV yeast ortholog complex reveals a novel BRCT interaction mode.,Dore AS, Furnham N, Davies OR, Sibanda BL, Chirgadze DY, Jackson SP, Pellegrini L, Blundell TL DNA Repair (Amst). 2006 Mar 7;5(3):362-8. Epub 2006 Jan 18. PMID:16388993<ref>PMID:16388993</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 1z56" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[DNA ligase 3D structures|DNA ligase 3D structures]]
*[[DNA ligase 3D structures|DNA ligase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Atcc 18824]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Blundell, T L]]
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[[Category: Saccharomyces cerevisiae]]
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[[Category: Chirgadze, D Y]]
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[[Category: Blundell TL]]
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[[Category: Davies, O R]]
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[[Category: Chirgadze DY]]
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[[Category: Dore, A S]]
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[[Category: Davies OR]]
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[[Category: Furnham, N]]
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[[Category: Dore AS]]
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[[Category: Jackson, S P]]
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[[Category: Furnham N]]
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[[Category: Pellegrini, L]]
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[[Category: Jackson SP]]
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[[Category: Sibanda, B L]]
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[[Category: Pellegrini L]]
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[[Category: Brct]]
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[[Category: Sibanda BL]]
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[[Category: Coiled-coil]]
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[[Category: Dna ligase]]
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[[Category: Dna repair]]
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[[Category: Ligase]]
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[[Category: Nhej]]
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[[Category: Xrcc4]]
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Current revision

Co-Crystal Structure of Lif1p-Lig4p

PDB ID 1z56

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