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| ==cobalt(III)-deglycopepleomycin determined by NMR studies== | | ==cobalt(III)-deglycopepleomycin determined by NMR studies== |
- | <StructureSection load='1ao2' size='340' side='right'caption='[[1ao2]], [[NMR_Ensembles_of_Models | 1 NMR models]]' scene=''> | + | <StructureSection load='1ao2' size='340' side='right'caption='[[1ao2]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AO2 FirstGlance]. <br> | + | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AO2 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3CO:COBALT+(III)+ION'>3CO</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene>, <scene name='pdbligand=PMY:AGLYCON+OF+PEPLOMYCIN'>PMY</scene></td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ao2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ao2 OCA], [https://pdbe.org/1ao2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ao2 RCSB], [https://www.ebi.ac.uk/pdbsum/1ao2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ao2 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ao2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ao2 OCA], [https://pdbe.org/1ao2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ao2 RCSB], [https://www.ebi.ac.uk/pdbsum/1ao2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ao2 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Caceres-Cortes, J]] | + | [[Category: Caceres-Cortes J]] |
- | [[Category: Ikudome, K]] | + | [[Category: Ikudome K]] |
- | [[Category: Saito, I]] | + | [[Category: Saito I]] |
- | [[Category: Sugiyama, H]] | + | [[Category: Sugiyama H]] |
- | [[Category: Wang, A H.J]] | + | [[Category: Wang AH-J]] |
- | [[Category: Anticancer drug]]
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- | [[Category: Bleomycin]]
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- | [[Category: Deglycosylated pepleomycin]]
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- | [[Category: Dna]]
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- | [[Category: Inhibitor]]
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- | [[Category: Peplomycin]]
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- | [[Category: Solution structure]]
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- | [[Category: Two-dimensional nmr]]
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| Structural highlights
Publication Abstract from PubMed
Pepleomycin (PEP) is a metalloglycopeptide that has stronger anticancer activity and less pulmonary toxicity than bleomycin (BLM). PEP, like BLM, exerts its action by binding to and degrading DNA in the presence of oxygen and certain metals. Obtaining detailed structural information of PEP and PEP-DNA complexes is crucial to understanding its anticancer activity. The structures of two green forms of cobalt-PEP species, HO2-Co(III)-PEP (denoted CoPEP) and deglycosylated HO2-Co(III)-PEP (denoted CodPEP) have been obtained by NOE restrained refinements. Earlier studies of the related HO2-Co(III)-BLM A2 proposed that two chiral conformers (form A or B) could exist with either the beta-aminoalanine primary amine (A,NH2) or the mannose carbamoyl nitrogen (M,NH2) as the axial ligand. Analysis of our NOESY data shows convincingly that form A is the most probable conformer with the mannose carbamoyl M,NH2 and the beta-aminoalanine primary amine A,NH2 as the axial ligands in CoPEP and CodPEP, respectively. The NOE cross-peaks resulting from the interactions between the N-terminus (i.e., the metal-binding domain) and the C-terminus of CoPEP and CodPEP have similar patterns, suggesting that they both adopt compact structures with the bithiazole group folded back over the N-terminus.
Structures of cobalt(III)-pepleomycin and cobalt(III)-deglycopepleomycin (green forms) determined by NMR studies.,Caceres-Cortes J, Sugiyama H, Ikudome K, Saito I, Wang AH Eur J Biochem. 1997 Mar 15;244(3):818-28. PMID:9108252[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Caceres-Cortes J, Sugiyama H, Ikudome K, Saito I, Wang AH. Structures of cobalt(III)-pepleomycin and cobalt(III)-deglycopepleomycin (green forms) determined by NMR studies. Eur J Biochem. 1997 Mar 15;244(3):818-28. PMID:9108252
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