This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5cib

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:07, 14 June 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5cib' size='340' side='right'caption='[[5cib]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
<StructureSection load='5cib' size='340' side='right'caption='[[5cib]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5cib]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CIB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CIB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5cib]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CIB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CIB FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=51S:2,4-DIMETHYLANILINE'>51S</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=51S:2,4-DIMETHYLANILINE'>51S</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[5cic|5cic]], [[5cid|5cid]], [[5cie|5cie]], [[5cif|5cif]], [[5cig|5cig]], [[5cih|5cih]]</div></td></tr>
 
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CCP1, CCP, CPO, YKR066C ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast]), CYC1, YJR048W, J1653 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
 
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cytochrome-c_peroxidase Cytochrome-c peroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.5 1.11.1.5] </span></td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cib OCA], [https://pdbe.org/5cib PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cib RCSB], [https://www.ebi.ac.uk/pdbsum/5cib PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cib ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cib OCA], [https://pdbe.org/5cib PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cib RCSB], [https://www.ebi.ac.uk/pdbsum/5cib PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cib ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/CCPR_YEAST CCPR_YEAST]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems. [[https://www.uniprot.org/uniprot/CYC1_YEAST CYC1_YEAST]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
+
[https://www.uniprot.org/uniprot/CCPR_YEAST CCPR_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 28: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Baker's yeast]]
 
-
[[Category: Cytochrome-c peroxidase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Crane, B R]]
+
[[Category: Saccharomyces cerevisiae S288C]]
-
[[Category: Payne, T M]]
+
[[Category: Crane BR]]
-
[[Category: Electron hopping]]
+
[[Category: Payne TM]]
-
[[Category: Electron transfer]]
+
-
[[Category: Electron transport-oxidoreductase complex]]
+
-
[[Category: Heme protein]]
+
-
[[Category: Multi-step tunneling]]
+
-
[[Category: Photochemistry]]
+

Current revision

Complex of yeast cytochrome c peroxidase (W191G) bound to 2,4-dimethylaniline with iso-1 cytochrome c

PDB ID 5cib

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools