6m6q
From Proteopedia
(Difference between revisions)
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==Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) N-terminal domain== | ==Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) N-terminal domain== | ||
- | <StructureSection load='6m6q' size='340' side='right'caption='[[6m6q]]' scene=''> | + | <StructureSection load='6m6q' size='340' side='right'caption='[[6m6q]], [[Resolution|resolution]] 2.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M6Q FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6m6q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caeel Caeel]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M6Q FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m6q OCA], [https://pdbe.org/6m6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m6q RCSB], [https://www.ebi.ac.uk/pdbsum/6m6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m6q ProSAT]</span></td></tr> | + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">drh-3, CELE_D2005.5, D2005.5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 CAEEL])</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m6q OCA], [https://pdbe.org/6m6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m6q RCSB], [https://www.ebi.ac.uk/pdbsum/6m6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m6q ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | DRH-3 is critically involved in germline development and RNA interference (RNAi) facilitated chromosome segregation via the 22G-siRNA pathway in Caenorhabditis elegans. DRH-3 has similar domain architecture to RIG-I-like receptors (RLRs) and belongs to the RIG-I-like RNA helicase family. The molecular understanding of DRH-3 and its function in endogenous RNAi pathways remains elusive. In this study, we solved the crystal structures of the DRH-3 N-terminal domain (NTD) and the C-terminal domains (CTDs) in complex with 5'-triphosphorylated RNAs. The NTD of DRH-3 adopts a distinct fold of tandem caspase activation and recruitment domains (CARDs) structurally similar to the CARDs of RIG-I and MDA5, suggesting a signaling function in the endogenous RNAi biogenesis. The CTD preferentially recognizes 5'-triphosphorylated double-stranded RNAs bearing the typical features of secondary siRNA transcripts. The full-length DRH-3 displays unique structural dynamics upon binding to RNA duplexes that differ from RIG-I or MDA5. These features of DRH-3 showcase the evolutionary divergence of the Dicer and RLR family of helicases. | ||
+ | |||
+ | Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3).,Li K, Zheng J, Wirawan M, Trinh NM, Fedorova O, Griffin PR, Pyle AM, Luo D Nucleic Acids Res. 2021 Sep 27;49(17):9978-9991. doi: 10.1093/nar/gkab712. PMID:34403472<ref>PMID:34403472</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6m6q" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Caeel]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Fedorova O]] | + | [[Category: Fedorova, O]] |
- | [[Category: Griffin P]] | + | [[Category: Griffin, P]] |
- | [[Category: Li K]] | + | [[Category: Li, K]] |
- | [[Category: Luo D]] | + | [[Category: Luo, D]] |
- | [[Category: Plyle A]] | + | [[Category: Plyle, A]] |
- | [[Category: Wirawan M]] | + | [[Category: Wirawan, M]] |
- | [[Category: Xiong Z]] | + | [[Category: Xiong, Z]] |
- | [[Category: Zheng J]] | + | [[Category: Zheng, J]] |
+ | [[Category: Card]] | ||
+ | [[Category: Rna helicase]] | ||
+ | [[Category: Signaling protein]] |
Revision as of 05:04, 10 August 2022
Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) N-terminal domain
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Categories: Caeel | Large Structures | Fedorova, O | Griffin, P | Li, K | Luo, D | Plyle, A | Wirawan, M | Xiong, Z | Zheng, J | Card | Rna helicase | Signaling protein