1f0i
From Proteopedia
(Difference between revisions)
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<StructureSection load='1f0i' size='340' side='right'caption='[[1f0i]], [[Resolution|resolution]] 1.40Å' scene=''> | <StructureSection load='1f0i' size='340' side='right'caption='[[1f0i]], [[Resolution|resolution]] 1.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1f0i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F0I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F0I FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1f0i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp._PMF Streptomyces sp. PMF]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F0I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F0I FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f0i OCA], [https://pdbe.org/1f0i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f0i RCSB], [https://www.ebi.ac.uk/pdbsum/1f0i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f0i ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f0i OCA], [https://pdbe.org/1f0i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f0i RCSB], [https://www.ebi.ac.uk/pdbsum/1f0i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f0i ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/P84147_STRSM P84147_STRSM] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f0i ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f0i ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | BACKGROUND: The phospholipase D (PLD) superfamily includes enzymes that are involved in phospholipid metabolism, nucleases, toxins and virus envelope proteins of unknown function. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. PLD also catalyses a transphosphatidylation reaction in the presence of phosphatidylcholine and a short-chained primary or secondary alcohol. RESULTS: The first crystal structure of a 54 kDa PLD has been determined to 1.9 A resolution using the multiwavelength anomalous dispersion (MAD) method on a single WO(4) ion and refined to 1.4 A resolution. PLD from the bacterial source Streptomyces sp. strain PMF consists of a single polypeptide chain that is folded into two domains. An active site is located at the interface between these domains. The presented structure supports the proposed superfamily relationship with the published structure of the 16 kDa endonuclease from Salmonella typhimurium. CONCLUSIONS: The structure of PLD provides insight into the structure and mode of action of not only bacterial, plant and mammalian PLDs, but also of a variety of enzymes as diverse as cardiolipin synthases, phosphatidylserine synthases, toxins, endonucleases, as well as poxvirus envelope proteins having a so far unknown function. The common features of these enzymes are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers. | ||
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- | The first crystal structure of a phospholipase D.,Leiros I, Secundo F, Zambonelli C, Servi S, Hough E Structure. 2000 Jun 15;8(6):655-67. PMID:10873862<ref>PMID:10873862</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1f0i" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
- | *[[Phospholipase D|Phospholipase D]] | + | *[[Phospholipase D 3D structures|Phospholipase D 3D structures]] |
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- | + | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | + | [[Category: Streptomyces sp. PMF]] | |
- | [[Category: Streptomyces sp]] | + | [[Category: Hough E]] |
- | [[Category: Hough | + | [[Category: Leiros I]] |
- | [[Category: Leiros | + | [[Category: Secundo F]] |
- | [[Category: Secundo | + | [[Category: Servi S]] |
- | [[Category: Servi | + | [[Category: Zambonelli C]] |
- | [[Category: Zambonelli | + | |
- | + | ||
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Revision as of 10:08, 20 March 2024
THE FIRST CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D
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