Sandbox Reserved 1678

From Proteopedia

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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
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== Function ==
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== Function of your protein ==
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My protein, alginate lyase, is important for breaking down alginate in the ocean; alginate is a protein with unique gel-forming properties
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My protein, alginate lyase, is important for breaking down alginate in the ocean; alginate is a protein with unique gel-forming properties.
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== Biological relevance and broader implications ==
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== Disease ==
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== Relevance ==
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== Important amino acids==
== Structural highlights ==
== Structural highlights ==
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Alginate lyase contains a main ligand that is an oligosaccharide: <scene name='87/873240/7c8f_view_2/1'>beta-D-mannopyranuronic acid-(1,4)-beta-D-mannopyranuronic acid.</scene>
Alginate lyase contains a main ligand that is an oligosaccharide: <scene name='87/873240/7c8f_view_2/1'>beta-D-mannopyranuronic acid-(1,4)-beta-D-mannopyranuronic acid.</scene>
The protein contains two domains, each made of 6 alpha helices and 15 beta sheets. The beta pleated sheets, 7 and 10, containing Gln124 (125 on Protopedia) and Tyr189 (190 on Protopedia), respectively, form <scene name='87/873240/Test_with_dr_hall/5'>important interactions</scene> with the main ligand.
The protein contains two domains, each made of 6 alpha helices and 15 beta sheets. The beta pleated sheets, 7 and 10, containing Gln124 (125 on Protopedia) and Tyr189 (190 on Protopedia), respectively, form <scene name='87/873240/Test_with_dr_hall/5'>important interactions</scene> with the main ligand.
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== Other important features ==

Revision as of 13:59, 7 April 2021

This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
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More help: Help:Editing

Alginate Lyase (AlyC3)

Caption for this structure

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References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

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