7c6d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Crystal structure of E19A mutant chitosanase from Bacillus subtilis MY002 complexed with 6 GlcN.==
==Crystal structure of E19A mutant chitosanase from Bacillus subtilis MY002 complexed with 6 GlcN.==
-
<StructureSection load='7c6d' size='340' side='right'caption='[[7c6d]]' scene=''>
+
<StructureSection load='7c6d' size='340' side='right'caption='[[7c6d]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7C6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7C6D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7c6d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7C6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7C6D FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7c6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7c6d OCA], [https://pdbe.org/7c6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7c6d RCSB], [https://www.ebi.ac.uk/pdbsum/7c6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7c6d ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GCS:D-GLUCOSAMINE'>GCS</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7c6c|7c6c]]</div></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">csn, BSU26890 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Chitosanase Chitosanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.132 3.2.1.132] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7c6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7c6d OCA], [https://pdbe.org/7c6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7c6d RCSB], [https://www.ebi.ac.uk/pdbsum/7c6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7c6d ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/CHIS_BACSU CHIS_BACSU]] Aids in the defense against invading fungal pathogens by degrading their cell wall chitosan.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Chitosan oligosaccharides (COS) are attractive active molecules for biomedical applications. Currently, the prohibitively high cost of producing fully defined COS hampers extensive studies on their biological activity and restricts their use in various industries. Thus, cost-effective production of pure COS is of major importance. In this report, chitosanase from Bacillus subtilis MY002 (CsnMY002) was prepared for COS production. The structure of apo CsnMY002 displayed an unexpected tunnel-like substrate-binding site and the structure of the CsnMY002_E19A/(GlcN)6 complex highlighted the "4 + 2'' splitting of hexaglucosamine even though the "3 + 3'' splitting is also observed in the TLC analysis of the enzyme products for hexaglucosamine. Structure based rational design was performed to generate mutants for chitobiose production. The CsnMY002_G21 K mutant produced chitobiose with a relative content &gt; 87 % from chitosan with a low degree of acetylation, and 50.65 mg chitobiose with a purity &gt; 98 % was prepared from 100 mg chitosan. The results provide insight on the catalytic mechanism of chitosanase and underpin future biomedical applications of pure chitobiose.
 +
 +
Structure-based rational design of chitosanase CsnMY002 for high yields of chitobiose.,Li Y, Gou Y, Liu Z, Xie T, Wang G Colloids Surf B Biointerfaces. 2021 Mar 17;202:111692. doi:, 10.1016/j.colsurfb.2021.111692. PMID:33744813<ref>PMID:33744813</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7c6d" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Bacsu]]
 +
[[Category: Chitosanase]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Gou Y]]
+
[[Category: Gou, Y]]
-
[[Category: Liu ZC]]
+
[[Category: Liu, Z C]]
-
[[Category: Wang GG]]
+
[[Category: Wang, G G]]
-
[[Category: Xie T]]
+
[[Category: Xie, T]]
 +
[[Category: Hydrolase]]

Revision as of 07:11, 7 April 2021

Crystal structure of E19A mutant chitosanase from Bacillus subtilis MY002 complexed with 6 GlcN.

PDB ID 7c6d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools