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==== N-terminal Domain ====
==== N-terminal Domain ====
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The <scene name='87/877554/N-terminal_domain/3'>N-terminal domain</scene> contains the <scene name='87/877554/Active_site_residues/10'>catalytic triad</scene> by which this enzyme catalyzes the hydrolysis of triglycerides, these residues are Ser159, Asp183, and His268, and also houses the <scene name='87/877554/Oxyanion_hole/9'>oxyanion hole</scene> to stabilize the transition state of the substrate through the backbone amides of Trp82 and Leu160. The N-terminal domain includes the lid region which is in an open conformation, meaning it is not blocking the active site. The <scene name='87/877554/Lid_region/6'>lid region</scene> consists of 2 short α-helices connected by a loop. <ref
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The <scene name='87/877554/N-terminal_domain/3'>N-terminal domain</scene> contains the <scene name='87/877554/Active_site_residues/10'>catalytic triad</scene> by which this enzyme catalyzes the hydrolysis of triglycerides, these residues are Ser159, Asp183, and His268, and also houses the <scene name='87/877554/Oxyanion_hole/9'>oxyanion hole</scene> to stabilize the transition state of the substrate through the backbone amides of Trp82 and Leu160. The N-terminal domain includes the lid region which was imaged in an open conformation, meaning it is not blocking the active site. The <scene name='87/877554/Lid_region/6'>lid region</scene> consists of 2 short α-helices connected by a loop, extending away from the protein. <ref
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name="Arora">PMID:31072929</ref>
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name="Arora">PMID:31072929</ref> This open conformation allows for many surface-exposed hydrophobic residues (valines,isoleucines, and leucines) to create a hydrophobic patch on the surface of LPL. The lid region helps to control for the entry of lipid substrates into the active site cleft.
====C-terminal Domain ====
====C-terminal Domain ====
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The <scene name='87/877554/C-terminal_domain/7'>C-terminal domain</scene> of LPL includes the GPIHBP1 binding site and the <scene name='87/877554/Lipid_binding_region/5'>tryptophan-rich lipid binding region</scene> that helps to contribute to the specificity of this enzyme for TRLs. <ref name="Arora">PMID:31072929</ref>
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The <scene name='87/877554/C-terminal_domain/7'>C-terminal domain</scene> of LPL includes the GPIHBP1 binding site and the <scene name='87/877554/Lipid_binding_region/5'>tryptophan-rich lipid binding region</scene> that helps to contribute to the specificity of this enzyme for TRLs by creating a second hydrophobic patch on the same face of LPL as the active site. The hydrophobic patches are believed to allow for the enzyme to bind TRL substrates with an orientation that facilitates delivery of triglycerides into the active site for catalysis. <ref name="Arora">PMID:31072929</ref>
=== GPIHBP1 ===
=== GPIHBP1 ===
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== Active Site ==
== Active Site ==
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The active site, located in the N-terminal domain is surrounded by a <scene name='87/877554/Hydrophobic_binding_region/2'> hydrophobic binding region </scene> that stabilizes the hydrophobic lipid substrate in the binding pocket. Within this hydrophobic region is the access point to the <scene name='87/877554/Access_to_ct/2'>catalytic triad</scene>.
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The active site, located in the N-terminal domain is surrounded by a <scene name='87/877554/Hydrophobic_binding_region/2'> hydrophobic binding region </scene> that stabilizes the hydrophobic lipid substrate in the binding pocket and forms van der Waals interaction with its hydrophobic tails. Within this hydrophobic region is the access point to the <scene name='87/877554/Access_to_ct/2'>catalytic triad</scene>.
=== Mechanism ===
=== Mechanism ===
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The active site consists of a catalytic triad SER-159, ASP-183 and HIS-268 that go through the [https://en.wikipedia.org/wiki/Serine_protease#Chymotrypsin-like serine protease mechanism of action]. The hallmark of this mechanism is the proton shuttle between the three residues that increases the nucleophilicity of the serine residue. Serine is then able to make the nucleophilic attack on the the carbonyl carbon of the scissile peptide bond of the substrate. During catalysis, an ordered mechanism occurs in which several intermediates are generated. The catalysis of the peptide cleavage can be seen as a ping-pong catalysis, in which the triglyceride binds, and the diglyceride is released. Then the second substrate, water, binds and the second product, the monoglyceride, is released.
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The active site consists of a catalytic triad Ser159, Asp183 and His268 that go through the [https://en.wikipedia.org/wiki/Serine_protease#Chymotrypsin-like serine protease mechanism of action]. The hallmark of this mechanism is the proton shuttle between the three residues that increases the nucleophilicity of the serine residue. Serine is then able to make the nucleophilic attack on the the carbonyl carbon of the scissile peptide bond of the substrate. During catalysis, an ordered mechanism occurs in which several intermediates are generated. The catalysis of the peptide cleavage can be seen as a ping-pong catalysis, in which the triglyceride binds, and the diglyceride is released. Then the second substrate, water, binds and the second product, the fatty acid, is released.

Revision as of 16:52, 13 April 2021

H. sapiens Lipoprotein Lipase in complex with GPIHBP1 and triglyceride metabolism

Lipoprotein lipase (green) bound to GPIHBP1 (cyan) (PDB:6OB0)

Drag the structure with the mouse to rotate


References

  1. 1.0 1.1 1.2 1.3 Arora R, Nimonkar AV, Baird D, Wang C, Chiu CH, Horton PA, Hanrahan S, Cubbon R, Weldon S, Tschantz WR, Mueller S, Brunner R, Lehr P, Meier P, Ottl J, Voznesensky A, Pandey P, Smith TM, Stojanovic A, Flyer A, Benson TE, Romanowski MJ, Trauger JW. Structure of lipoprotein lipase in complex with GPIHBP1. Proc Natl Acad Sci U S A. 2019 May 21;116(21):10360-10365. doi:, 10.1073/pnas.1820171116. Epub 2019 May 9. PMID:31072929 doi:http://dx.doi.org/10.1073/pnas.1820171116
  2. 2.0 2.1 Olivecrona G. Role of lipoprotein lipase in lipid metabolism. Curr Opin Lipidol. 2016 Jun;27(3):233-41. doi: 10.1097/MOL.0000000000000297. PMID:27031275 doi:http://dx.doi.org/10.1097/MOL.0000000000000297
  3. 3.0 3.1 3.2 Birrane G, Beigneux AP, Dwyer B, Strack-Logue B, Kristensen KK, Francone OL, Fong LG, Mertens HDT, Pan CQ, Ploug M, Young SG, Meiyappan M. Structure of the lipoprotein lipase-GPIHBP1 complex that mediates plasma triglyceride hydrolysis. Proc Natl Acad Sci U S A. 2018 Dec 17. pii: 1817984116. doi:, 10.1073/pnas.1817984116. PMID:30559189 doi:http://dx.doi.org/10.1073/pnas.1817984116
  4. Fong LG, Young SG, Beigneux AP, Bensadoun A, Oberer M, Jiang H, Ploug M. GPIHBP1 and Plasma Triglyceride Metabolism. Trends Endocrinol Metab. 2016 Jul;27(7):455-469. doi: 10.1016/j.tem.2016.04.013. , Epub 2016 May 14. PMID:27185325 doi:http://dx.doi.org/10.1016/j.tem.2016.04.013



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