2l0q
From Proteopedia
(Difference between revisions)
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==NMR Solution Structure of Vibrio harveyi Acyl Carrier Protein (ACP)== | ==NMR Solution Structure of Vibrio harveyi Acyl Carrier Protein (ACP)== | ||
- | <StructureSection load='2l0q' size='340' side='right'caption='[[2l0q | + | <StructureSection load='2l0q' size='340' side='right'caption='[[2l0q]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[2l0q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2l0q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_harveyi_1DA3 Vibrio harveyi 1DA3]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L0Q FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l0q OCA], [https://pdbe.org/2l0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l0q RCSB], [https://www.ebi.ac.uk/pdbsum/2l0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l0q ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l0q OCA], [https://pdbe.org/2l0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l0q RCSB], [https://www.ebi.ac.uk/pdbsum/2l0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l0q ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/D0XCG4_VIBH1 D0XCG4_VIBH1] Carrier of the growing fatty acid chain in fatty acid biosynthesis.[HAMAP-Rule:MF_01217][RuleBase:RU003545] | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2l0q ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2l0q ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Bacterial acyl carrier protein (ACP) is a highly anionic, 9 kDa protein that functions as a cofactor protein in fatty acid biosynthesis. Escherichia coli ACP is folded at neutral pH and in the absence of divalent cations, while Vibrio harveyi ACP, which is very similar at 86% sequence identity, is unfolded under the same conditions. V. harveyi ACP adopts a folded conformation upon the addition of divalent cations such as Ca(2+) and Mg(2+) and a mutant, A75H, was previously identified that restores the folded conformation at pH 7 in the absence of divalent cations. In this study we sought to understand the unique folding behavior of V. harveyi ACP using NMR spectroscopy and biophysical methods. The NMR solution structure of V. harveyi ACP A75H displays the canonical ACP structure with four helices surrounding a hydrophobic core, with a narrow pocket closed off from the solvent to house the acyl chain. His-75, which is charged at neutral pH, participates in a stacking interaction with Tyr-71 in the far C-terminal end of helix IV. pH titrations and the electrostatic profile of ACP suggest that V. harveyi ACP is destabilized by anionic charge repulsion around helix II that can be partially neutralized by His-75 and is further reduced by divalent cation binding. This is supported by differential scanning calorimetry data which indicate that calcium binding further increases the melting temperature of V. harveyi ACP A75H by approximately 20 degrees C. Divalent cation binding does not alter ACP dynamics on the ps-ns timescale as determined by (15)N NMR relaxation experiments, however, it clearly stabilizes the protein fold as observed by hydrogen-deuterium exchange studies. Finally, we demonstrate that the E. coli ACP H75A mutant is similarly unfolded as wild-type V. harveyi ACP, further stressing the importance of this particular residue for proper protein folding. | ||
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- | NMR solution structure and biophysical characterization of Vibrio harveyi acyl carrier protein A75H: effects of divalent metal ions.,Chan DI, Chu BC, Lau CK, Hunter HN, Byers DM, Vogel HJ J Biol Chem. 2010 Oct 1;285(40):30558-66. Epub 2010 Jul 21. PMID:20659901<ref>PMID:20659901</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 2l0q" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Acyl carrier protein 3D structures|Acyl carrier protein 3D structures]] | *[[Acyl carrier protein 3D structures|Acyl carrier protein 3D structures]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Vibrio harveyi 1DA3]] |
- | [[Category: Byers | + | [[Category: Byers DM]] |
- | [[Category: Chan | + | [[Category: Chan DI]] |
- | [[Category: Chu | + | [[Category: Chu BCH]] |
- | [[Category: Hunter | + | [[Category: Hunter HN]] |
- | [[Category: Lau | + | [[Category: Lau CKY]] |
- | [[Category: Vogel | + | [[Category: Vogel HJ]] |
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Current revision
NMR Solution Structure of Vibrio harveyi Acyl Carrier Protein (ACP)
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Categories: Large Structures | Vibrio harveyi 1DA3 | Byers DM | Chan DI | Chu BCH | Hunter HN | Lau CKY | Vogel HJ