2lai

From Proteopedia

(Difference between revisions)

Revision as of 08:28, 18 January 2023

Hyaloperonospora arabidopsidis Effector Protein ATR13

Structural highlights

2lai is a 1 chain structure with sequence from Hyaloperonospora parasitica. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

ATR13_HYAAB Secreted effector that acts as an elicitor of hypersensitive response (HR) specifically on plants carrying defense protein RPP13. Recognition of ATR13 by RPP13 initiates defense responses that are effective against oomycete, bacterial and viral pathogens (PubMed:15591208, PubMed:18165328, PubMed:18198274, PubMed:22194907). The allele ATR13-Emco5 recognizes RPP13-Nd, the RPP13 defense protein from Arabidopsis thaliana ecotype Niederzenz (PubMed:19523099).^[1] ^[2] ^[3] ^[4] ^[5]

Publication Abstract from PubMed

The oomycete Hyaloperonospora arabidopsidis (Hpa) is the causal agent of downy mildew on the model plant Arabidopsis thaliana and has been adapted as a model system to investigate pathogen virulence strategies and plant disease resistance mechanisms. Recognition of Hpa infection occurs when plant resistance proteins (R-genes) detect the presence or activity of pathogen-derived protein effectors delivered to the plant host. This study examines the Hpa effector ATR13 Emco5 and its recognition by RPP13-Nd, the cognate R-gene that triggers programmed cell death (HR) in the presence of recognized ATR13 variants. Herein, we use NMR to solve the backbone structure of ATR13 Emco5, revealing both a helical domain and a disordered internal loop. Additionally, we use site-directed and random mutagenesis to identify several amino acid residues involved in the recognition response conferred by RPP13-Nd. Using our structure as a scaffold, we map these residues to one of two surface-exposed patches of residues under diversifying selection. Exploring possible roles of the disordered region within the ATR13 structure, we perform domain swapping experiments and identify a peptide sequence involved in nucleolar localization. We conclude that ATR13 is a highly dynamic protein with no clear structural homologues that contains two surface-exposed patches of polymorphism, only one of which is involved in RPP13-Nd recognition specificity.

Structural Elucidation and Functional Characterization of the Hyaloperonospora arabidopsidis Effector Protein ATR13.,Leonelli L, Pelton J, Schoeffler A, Dahlbeck D, Berger J, Wemmer DE, Staskawicz B PLoS Pathog. 2011 Dec;7(12):e1002428. Epub 2011 Dec 15. PMID:22194684^[6]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Allen RL, Bittner-Eddy PD, Grenville-Briggs LJ, Meitz JC, Rehmany AP, Rose LE, Beynon JL. Host-parasite coevolutionary conflict between Arabidopsis and downy mildew. Science. 2004 Dec 10;306(5703):1957-60. PMID:15591208 doi:http://dx.doi.org/306/5703/1957
↑ Sohn KH, Lei R, Nemri A, Jones JD. The downy mildew effector proteins ATR1 and ATR13 promote disease susceptibility in Arabidopsis thaliana. Plant Cell. 2007 Dec;19(12):4077-90. doi: 10.1105/tpc.107.054262. Epub 2007 Dec , 28. PMID:18165328 doi:http://dx.doi.org/10.1105/tpc.107.054262
↑ Rentel MC, Leonelli L, Dahlbeck D, Zhao B, Staskawicz BJ. Recognition of the Hyaloperonospora parasitica effector ATR13 triggers resistance against oomycete, bacterial, and viral pathogens. Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):1091-6. doi: , 10.1073/pnas.0711215105. Epub 2008 Jan 15. PMID:18198274 doi:http://dx.doi.org/10.1073/pnas.0711215105
↑ Hall SA, Allen RL, Baumber RE, Baxter LA, Fisher K, Bittner-Eddy PD, Rose LE, Holub EB, Beynon JL. Maintenance of genetic variation in plants and pathogens involves complex networks of gene-for-gene interactions. Mol Plant Pathol. 2009 Jul;10(4):449-57. doi: 10.1111/j.1364-3703.2009.00544.x. PMID:19523099 doi:http://dx.doi.org/10.1111/j.1364-3703.2009.00544.x
↑ Krasileva KV, Zheng C, Leonelli L, Goritschnig S, Dahlbeck D, Staskawicz BJ. Global analysis of Arabidopsis/downy mildew interactions reveals prevalence of incomplete resistance and rapid evolution of pathogen recognition. PLoS One. 2011;6(12):e28765. doi: 10.1371/journal.pone.0028765. Epub 2011 Dec 14. PMID:22194907 doi:http://dx.doi.org/10.1371/journal.pone.0028765
↑ Leonelli L, Pelton J, Schoeffler A, Dahlbeck D, Berger J, Wemmer DE, Staskawicz B. Structural Elucidation and Functional Characterization of the Hyaloperonospora arabidopsidis Effector Protein ATR13. PLoS Pathog. 2011 Dec;7(12):e1002428. Epub 2011 Dec 15. PMID:22194684 doi:10.1371/journal.ppat.1002428

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2lai"

@@ Line 1: / Line 1: @@
 ==Hyaloperonospora arabidopsidis Effector Protein ATR13==
-<StructureSection load='2lai' size='340' side='right'caption='[[2lai]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2lai' size='340' side='right'caption='[[2lai]]' scene=''>
 == Structural highlights ==
 <table><tr><td colspan='2'>[[2lai]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hyaloperonospora_parasitica Hyaloperonospora parasitica]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LAI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LAI FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Atr13 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=123356 Hyaloperonospora parasitica])</td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lai FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lai OCA], [https://pdbe.org/2lai PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lai RCSB], [https://www.ebi.ac.uk/pdbsum/2lai PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lai ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lai FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lai OCA], [https://pdbe.org/2lai PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lai RCSB], [https://www.ebi.ac.uk/pdbsum/2lai PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lai ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/ATR13_HYAAB ATR13_HYAAB] Secreted effector that acts as an elicitor of hypersensitive response (HR) specifically on plants carrying defense protein RPP13. Recognition of ATR13 by RPP13 initiates defense responses that are effective against oomycete, bacterial and viral pathogens (PubMed:15591208, PubMed:18165328, PubMed:18198274, PubMed:22194907). The allele ATR13-Emco5 recognizes RPP13-Nd, the RPP13 defense protein from Arabidopsis thaliana ecotype Niederzenz (PubMed:19523099).<ref>PMID:15591208</ref> <ref>PMID:18165328</ref> <ref>PMID:18198274</ref> <ref>PMID:19523099</ref> <ref>PMID:22194907</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 16: / Line 17: @@
 </div>
 <div class="pdbe-citations 2lai" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Avirulence protein 3D structures|Avirulence protein 3D structures]]
 == References ==
 <references/>
@@ Line 22: / Line 26: @@
 [[Category: Hyaloperonospora parasitica]]
 [[Category: Large Structures]]
-[[Category: Leonelli, L]]
+[[Category: Leonelli L]]
-[[Category: Pelton, J G]]
+[[Category: Pelton JG]]
-[[Category: Staskawicz, B J]]
+[[Category: Staskawicz BJ]]
-[[Category: Wemmer, D E]]
+[[Category: Wemmer DE]]
-[[Category: Nucleolar localization]]
-[[Category: Signaling protein]]

2lai

From Proteopedia

Revision as of 08:28, 18 January 2023

Hyaloperonospora arabidopsidis Effector Protein ATR13

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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