Sandbox Reserved 1678

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 11: Line 11:
== Important amino acids==
== Important amino acids==
 +
Alginate lyase contains a main ligand that is an oligosaccharide: <scene name='87/873240/7c8f_view_2/1'>beta-D-mannopyranuronic acid-(1,4)-beta-D-mannopyranuronic acid.</scene>
 +
The beta pleated sheets, 7 and 10, containing Gln124 (125 on Protopedia) and Tyr189 (190 on Protopedia), respectively, form <scene name='87/873240/Test_with_dr_hall/5'>important interactions</scene> with the main ligand.
== Structural highlights ==
== Structural highlights ==
Line 17: Line 19:
A space-fill view of the protein is shown <scene name='87/873240/Spacefill_cleft_and_substrate/1'>here</scene>, and the long cleft in the blue domain can be seen where the substrate binds to the active site. The cleft is a long valley-like groove for the long-chained sugar substrate to sit in. The space-fill view also clearly displays the two domains of the protein.
A space-fill view of the protein is shown <scene name='87/873240/Spacefill_cleft_and_substrate/1'>here</scene>, and the long cleft in the blue domain can be seen where the substrate binds to the active site. The cleft is a long valley-like groove for the long-chained sugar substrate to sit in. The space-fill view also clearly displays the two domains of the protein.
-
Alginate lyase contains a main ligand that is an oligosaccharide: <scene name='87/873240/7c8f_view_2/1'>beta-D-mannopyranuronic acid-(1,4)-beta-D-mannopyranuronic acid.</scene>
+
 
-
The beta pleated sheets, 7 and 10, containing Gln124 (125 on Protopedia) and Tyr189 (190 on Protopedia), respectively, form <scene name='87/873240/Test_with_dr_hall/5'>important interactions</scene> with the main ligand.
+
== Other important features ==
== Other important features ==

Revision as of 03:48, 16 April 2021

This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Alginate Lyase (AlyC3)

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

[1]

Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_1678"
Personal tools