This protein has 2 large beta-sheets and 4 alpha-helices. The , binds with beta-sheet A. Beta sheet A also contains most of the catalytic amino acids.
Function of your protein
Alginate lyase, AlyC3, comes from the Psychromonas organism. It is found mainly in algae.
The function of AlyC3 is to degrade alginate. AlyC3 plays a role in b-elimination at the glycosidic 1,4-O link. This generates oligosaccharides or monosaccharides.
- insert rotating image of AlyC3 as a cartoon*
The known substrate for AlyC3 is polymannuronate (PM) and tetramannuronate.
Biological relevance and broader implications
Alginate is a linear polysaccharide present in great abundance in brown seaweeds, accounting for ;40% dry weight of
brown algae (1). Brown seaweeds are the most productive algae
in marine ecosystems. For example, kelp forests produce large
amounts of biomass rapidly, forming the basis of coastal food
webs and constituting an important carbon sink (2). Therefore,
alginate is an important marine polysaccharide and carrier of
the marine carbon cycle. In addition to brown algae, alginate
Alginate lyases are
promising enzymes for the treatment of chronic lung infection
by Pseudomonas aeruginosa (9). The synergistic action of endoand exolytic alginate lyases have remarkable potential for the
production of biofuels by deconstructing the alginate-rich algal
cell walls into monosaccharides (10, 11). Therefore, research
on the characteristics and molecular catalytic mechanisms of
alginate lyases is important to understand the degradation and
recycling of alginate in the ocean and to facilitate the development of their industrial applications.
Important amino acids
The ligands present in AlyC3 are the same as the substrate, polymannuronate and tetramannuronate, both sugars.
The catalytic amino acids in the binding site are His127 and Tyr 244. (Figure E) These residues act as the catalytic acid and base for the reaction. Tetramannuronate is cleaved in the active site and produces trisaccharides and monosaccharides.
Arg78 and Gln125 are also present and work to neutralize the negative charge on the carboxylic group.
Figure 5D shows the active site. show the catalytic triad amino acids and hydrogen bond with beta sheets
Structural highlights
Other important features
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