Sandbox Reserved 1671
From Proteopedia
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== Important amino acids== | == Important amino acids== | ||
- | There are<scene name='87/873233/4_residues/1'> 4 catalytic amino acids</scene> which are essential for catalyzing the reactions and if one of them is mutated it can cause a huge effect in any enzyme. | + | There are<scene name='87/873233/4_residues/1'> 4 catalytic amino acids</scene> which are essential for catalyzing the reactions and if one of them is mutated it can cause a huge effect in any enzyme. They are the ones that can preform acid base chemistry and catalyze the reaction which help it to make reactions happen appropriately. |
there are <scene name='87/873233/Ligands/1'>2 ligands</scene> which are NAD and OYA. | there are <scene name='87/873233/Ligands/1'>2 ligands</scene> which are NAD and OYA. | ||
The mutation was caused in the <scene name='87/873233/Mutant_ala_291/2'>cystine</scene> 291 position which is also one go the 4 catalytic residues. It was mutated to an alanine. | The mutation was caused in the <scene name='87/873233/Mutant_ala_291/2'>cystine</scene> 291 position which is also one go the 4 catalytic residues. It was mutated to an alanine. | ||
- | <scene name='87/873233/14_other_aa/2'>19 other residues important for | + | there are also<scene name='87/873233/14_other_aa/2'> 19</scene> other residues that are important for NAD binding. |
== Structural highlights == | == Structural highlights == | ||
- | The octantal was the best substrate with the lowest Km and the highest affinity. | + | The octantal was the best substrate with the lowest Km and the highest affinity out of all 23 substrates. |
Ald-C is also a homodimer. | Ald-C is also a homodimer. | ||
Revision as of 22:28, 18 April 2021
This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682. |
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Ald-C
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References
Lee, S. G., Harline, K., Abar, O., Akadri, S. O., Bastian, A. G., Chen, H. S., Duan, M., Focht, C. M., Groziak, A. R., Kao, J., Kottapalli, J. S., Leong, M. C., Lin, J. J., Liu, R., Luo, J. E., Meyer, C. M., Mo, A. F., Pahng, S. H., Penna, V., Raciti, C. D., … Jez, J. M. (2020). The plant pathogen enzyme AldC is a long-chain aliphatic aldehyde dehydrogenase. The Journal of biological chemistry, 295(40), 13914–13926. https://doi.org/10.1074/jbc.RA120.014747
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644