6wkv
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Cryo-EM structure of engineered variant of the Encapsulin from Thermotoga maritima (TmE)== | ==Cryo-EM structure of engineered variant of the Encapsulin from Thermotoga maritima (TmE)== | ||
| - | <StructureSection load='6wkv' size='340' side='right'caption='[[6wkv]]' scene=''> | + | <StructureSection load='6wkv' size='340' side='right'caption='[[6wkv]], [[Resolution|resolution]] 2.99Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WKV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6wkv]] is a 60 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WKV FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wkv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkv OCA], [https://pdbe.org/6wkv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wkv RCSB], [https://www.ebi.ac.uk/pdbsum/6wkv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkv ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.99Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wkv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkv OCA], [https://pdbe.org/6wkv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wkv RCSB], [https://www.ebi.ac.uk/pdbsum/6wkv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkv ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/ENCAP_THEMA ENCAP_THEMA] Shell component of a type 1 encapsulin nanocompartment. Assembles into proteinaceous shells 23-24 nm in diameter with 2-2.5 nm thick walls. Cargo protein Flp (ferritin-like protein, may store iron) is targeted to the interior via its C-terminal extension; empty intact shells can be isolated in the absence of cargo protein (PubMed:19172747, PubMed:27224728, PubMed:32961724, PubMed:30376298, PubMed:33769792, PubMed:33953921, PubMed:34815415). Fe(2+) may be able to pass though the 5-fold and dimer channels in the protein shell (Probable).<ref>PMID:19172747</ref> <ref>PMID:27224728</ref> <ref>PMID:30376298</ref> <ref>PMID:32961724</ref> <ref>PMID:33769792</ref> <ref>PMID:33953921</ref> <ref>PMID:34815415</ref> <ref>PMID:33953921</ref> Protease that exhibits activity toward chymotrypsin and trypsin substrates (PubMed:9872409, PubMed:11210524). Probably does not have antibacterial activity (Probable).<ref>PMID:11210524</ref> <ref>PMID:9872409</ref> <ref>PMID:19172747</ref> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Thermotoga maritima]] | ||
[[Category: Jenkins M]] | [[Category: Jenkins M]] | ||
[[Category: Juneja P]] | [[Category: Juneja P]] | ||
Current revision
Cryo-EM structure of engineered variant of the Encapsulin from Thermotoga maritima (TmE)
| |||||||||||
