7e4e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:49, 1 May 2024) (edit) (undo)
 
Line 1: Line 1:
==NMR solution structures of DNA minidumbbell containing a N1-methyladenine==
==NMR solution structures of DNA minidumbbell containing a N1-methyladenine==
-
<StructureSection load='7e4e' size='340' side='right'caption='[[7e4e]], [[NMR_Ensembles_of_Models | 5 NMR models]]' scene=''>
+
<StructureSection load='7e4e' size='340' side='right'caption='[[7e4e]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7e4e]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E4E FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7e4e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E4E FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MA7:1N-METHYLADENOSINE-5-MONOPHOSPHATE'>MA7</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MA7:1N-METHYLADENOSINE-5-MONOPHOSPHATE'>MA7</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e4e OCA], [https://pdbe.org/7e4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e4e RCSB], [https://www.ebi.ac.uk/pdbsum/7e4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e4e ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e4e OCA], [https://pdbe.org/7e4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e4e RCSB], [https://www.ebi.ac.uk/pdbsum/7e4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e4e ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
DNA methylation is a prevalent regulatory modification in prokaryotes and eukaryotes. N(1)-methyladenine (m(1)A) and N(6)-methyladenine (m(6)A) have been found to be capable of altering DNA structures via disturbing Watson-Crick base pairing. However, little has been known about their influences on non-B DNA structures, which are associated with genetic instabilities. In this work, we investigated the effects of m(1)A and m(6)A on both the structure and thermodynamic stability of a newly reported DNA minidumbbell formed by two TTTA tetranucleotide repeats. As revealed by the results of nuclear magnetic resonance spectroscopic studies, both m(1)A and m(6)A favored the formation of a T.m(1)A and T.m(6)A Hoogsteen base pair, respectively. More intriguingly, the m(1)A and m(6)A modifications brought about stabilization and destabilization effects on the DNA minidumbbell, respectively. This work provides new biophysical insights into the effects of adenine methylation on the structure and thermodynamic stability of DNA.
 
- 
-
Effects of Adenine Methylation on the Structure and Thermodynamic Stability of a DNA Minidumbbell.,Wan L, Lam SL, Lee HK, Guo P Int J Mol Sci. 2021 Mar 31;22(7). pii: ijms22073633. doi: 10.3390/ijms22073633. PMID:33807305<ref>PMID:33807305</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 7e4e" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Guo, P]]
+
[[Category: Staphylococcus aureus]]
-
[[Category: Lam, S L]]
+
[[Category: Guo P]]
-
[[Category: Wan, L]]
+
[[Category: Lam SL]]
-
[[Category: Dna]]
+
[[Category: Wan L]]
-
[[Category: Dna minidumbbell]]
+
-
[[Category: Hoogsteen base pair]]
+
-
[[Category: Methylation]]
+
-
[[Category: N1-methyladenine]]
+
-
[[Category: Non-b dna]]
+

Current revision

NMR solution structures of DNA minidumbbell containing a N1-methyladenine

PDB ID 7e4e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools