1pxw
From Proteopedia
(Difference between revisions)
Line 3: | Line 3: | ||
<StructureSection load='1pxw' size='340' side='right'caption='[[1pxw]], [[Resolution|resolution]] 1.94Å' scene=''> | <StructureSection load='1pxw' size='340' side='right'caption='[[1pxw]], [[Resolution|resolution]] 1.94Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1pxw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1pxw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PXW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PXW FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pxw OCA], [https://pdbe.org/1pxw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pxw RCSB], [https://www.ebi.ac.uk/pdbsum/1pxw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pxw ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94Å</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pxw OCA], [https://pdbe.org/1pxw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pxw RCSB], [https://www.ebi.ac.uk/pdbsum/1pxw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pxw ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/RL7A_PYRAB RL7A_PYRAB] Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Line 18: | Line 19: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pxw ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pxw ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | The L7Ae sRNP core protein from Pyrococcus abyssii was crystallized using the sitting-drop vapour-diffusion method. Crystals were obtained in the presence of MgCl(2), PEG 2000 MME and acetate buffer at pH 4.0. A native data set has been collected at 2.9 A resolution using a rotating-anode generator at room temperature. Crystals belong to the orthorhombic space group P2(1)2(1)2, with unit-cell parameters a = 70.7, b = 112.9, c = 34.8 A. There are two monomers of MW 14 200 Da per asymmetric unit and the packing density V(M) is 2.45 A(3) Da(-1). A molecular-replacement analysis gave solutions for the rotation and translation functions. | ||
- | |||
- | Purification, crystallization and preliminary X-ray diffraction data of L7Ae sRNP core protein from Pyrococcus abyssii.,Charron C, Manival X, Charpentier B, Branlant C, Aubry A Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):122-4. Epub 2003, Dec 18. PMID:14684904<ref>PMID:14684904</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1pxw" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Ribosomal protein L7/L12|Ribosomal protein L7/L12]] | *[[Ribosomal protein L7/L12|Ribosomal protein L7/L12]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Pyrococcus abyssi erauso et al. 1993]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Aubry | + | [[Category: Pyrococcus abyssi]] |
- | [[Category: Branlant | + | [[Category: Aubry A]] |
- | [[Category: Charpentier | + | [[Category: Branlant C]] |
- | [[Category: Charron | + | [[Category: Charpentier B]] |
- | [[Category: Manival | + | [[Category: Charron C]] |
- | + | [[Category: Manival X]] |
Current revision
Crystal structure of L7Ae sRNP core protein from Pyrococcus abyssii
|