User:Maggie Stopa/Sandbox 1

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=Lipoprotein Lipase LPL=
=Lipoprotein Lipase LPL=
<StructureSection load='6ob0' size='350' side='right' caption='Lipoprotein Lipase PDB' scene='87/877513/Original_scene/1'>
<StructureSection load='6ob0' size='350' side='right' caption='Lipoprotein Lipase PDB' scene='87/877513/Original_scene/1'>
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==Structural Overview==
==Structural Overview==
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<scene name='87/877513/Original_scene/1'>LPL</scene> is assumed to only be active as a <scene name='87/877513/Lpl_dimer/1'>homodimer</scene>, however, previous studies have argued that the lipase can be active in its monomeric form. (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6442593/) The N-terminal domain of lipoprotein lipase is known to consist of an alpha/beta hydrolase domain, which is composed of six alpha helices and ten beta-strands. This domain creates an <scene name='87/877513/Alpha-beta_hydrolase_domain/1'>alpha/beta hydrolase fold</scene>. The C-terminal domain of lipoprotein lipase is composed of twelve beta strands which form a “<scene name='87/877513/Barrel_domain/3'>barrel domain</scene>”.
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<scene name='87/877513/Original_scene/1'>LPL</scene> is assumed to only be active as a <scene name='87/877513/Lpl_dimer/2'>homodimer</scene>, however, previous studies have argued that the lipase can be active in its monomeric form. (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6442593/) The N-terminal domain of lipoprotein lipase is known to consist of an alpha/beta hydrolase domain, which is composed of six alpha helices and ten beta-strands. This domain creates an <scene name='87/877513/Alpha-beta_hydrolase_domain/1'>alpha/beta hydrolase fold</scene>. The C-terminal domain of lipoprotein lipase is composed of twelve beta strands which form a “<scene name='87/877513/Barrel_domain/3'>barrel domain</scene>”.
==Mechanism==
==Mechanism==
Lipoprotein Lipase functions to catalyze the hydrolysis of one [https://en.wikipedia.org/wiki/Ester ester bond] of triglycerides. It does this by utilizing a simple [https://en.wikipedia.org/wiki/Serine_hydrolase serine hydrolase] mechanism, in which it uses a <scene name='87/877513/Catalytic_triad/3'>catalytic triad</scene> composed of Asp183, His268, and Ser159 to catalyze the hydrolysis. His268 serves as a base catalyst by deprotonation of Ser159, which can then serve as the [https://en.wikipedia.org/wiki/Nucleophile nucleophile]. The transition state of the catalysis is stabilized by the <scene name='87/877516/Oxyanion_hole_master/1'>oxyanion hole</scene> composed of Trp82 and Leu160. The hydrolysis results in the formation of one free fatty acid and a glycerol with two fatty acid tails.
Lipoprotein Lipase functions to catalyze the hydrolysis of one [https://en.wikipedia.org/wiki/Ester ester bond] of triglycerides. It does this by utilizing a simple [https://en.wikipedia.org/wiki/Serine_hydrolase serine hydrolase] mechanism, in which it uses a <scene name='87/877513/Catalytic_triad/3'>catalytic triad</scene> composed of Asp183, His268, and Ser159 to catalyze the hydrolysis. His268 serves as a base catalyst by deprotonation of Ser159, which can then serve as the [https://en.wikipedia.org/wiki/Nucleophile nucleophile]. The transition state of the catalysis is stabilized by the <scene name='87/877516/Oxyanion_hole_master/1'>oxyanion hole</scene> composed of Trp82 and Leu160. The hydrolysis results in the formation of one free fatty acid and a glycerol with two fatty acid tails.
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[[Image:LPL_final_Mechanism.png|500 px|center|thumb|Serine hydrolase mechanism utilized by LPL to catalyze the breakdown of one ester bond of a triglyceride. Compounds colored red are the products of the hydrolysis.]]
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[[Image:LPL_final_Mechanism.png|600 px|center|thumb|Serine hydrolase mechanism utilized by LPL to catalyze the breakdown of one ester bond of a triglyceride. Compounds colored red are the products of the hydrolysis.]]
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<scene name='87/877513/Hydrophobic_interface-labeled/1'>hydrophobic interface</scene>
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== Relevance & Disease ==
== Relevance & Disease ==
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Original look: <scene name='87/877513/Original_scene/1'>LPL</scene>
Original look: <scene name='87/877513/Original_scene/1'>LPL</scene>
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GPI/LPL interface: <scene name='87/877513/Hydrophobic_interface/1'>hydrophobic interface</scene>
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GPI/LPL interface (w/labels): <scene name='87/877513/Hydrophobic_interface-labeled/1'>hydrophobic interface</scene>
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Calcium ion stabilization:<scene name='87/877513/Calcium_stabilization/5'>calcium ion</scene>
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Calcium ion stabilization:<scene name='87/877513/Calcium_stabilization_-labeled/1'>calcium ion stabilization</scene>
<scene name='87/877514/Lipid_binding_and_lid/1'>lipid binding region</scene>
<scene name='87/877514/Lipid_binding_and_lid/1'>lipid binding region</scene>
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<scene name='87/877513/Hydrophobic_interface-labeled/1'>hydrophobic interface</scene>
 
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Lid: <scene name='87/877514/Lid_region_final/1'>Lid Region</scene>
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<scene name='87/877513/Lpl_dimer/2'>homodimer</scene>
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Lid: <scene name='87/877514/Lid_region_final/1'>Lid Region</scene>
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<scene name='87/877513/Calcium_stabilization_-labeled/1'>calcium ion stabilization</scene>
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== References ==
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<references/>
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<ref name=”Arora”>PMID:31072929</ref>
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<ref name=”Birrane”>PMID:30559189</ref>
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<ref name=”Davies”>PMID:20620994</ref>
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<ref name=”Beigneux”>PMID:30850549</ref>
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<ref name=”Mead”>PMID:12483461</ref> (LPL GENERAL REFERENCE)
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<ref name=”Eckel”>PMID:2648155</ref> (LPL GENERAL REFERENCE BOOK IF NEEDED)
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==Student Contributors==
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Giselle Flores
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Dustin Soe
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Maggie Stopa

Revision as of 21:42, 23 April 2021

Lipoprotein Lipase LPL

Lipoprotein Lipase PDB

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