User:Megan Leaman/Sandbox 1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 17: Line 17:
=== Active Site ===
=== Active Site ===
The active site of DGAT is in the transmembrane region of the enzyme. When it is in its <scene name='87/877557/His_no_oleoyl/3'>unbound</scene> state and no oleoyl-CoA is in its tunnel, Met434 hydrogen bonds to the catalytic histidine, His415, which stabilizes the conformation. There are no major conformational changes that take place upon oleoyl-CoA binding into the cytosolic tunnel, however, several key residues change conformation to allow for correct positioning
The active site of DGAT is in the transmembrane region of the enzyme. When it is in its <scene name='87/877557/His_no_oleoyl/3'>unbound</scene> state and no oleoyl-CoA is in its tunnel, Met434 hydrogen bonds to the catalytic histidine, His415, which stabilizes the conformation. There are no major conformational changes that take place upon oleoyl-CoA binding into the cytosolic tunnel, however, several key residues change conformation to allow for correct positioning
-
of the ligand. In its <scene name='87/877557/Active_site/6'>bound</scene> conformation, His415 hydrogen bonds to Gln465 which stabilizes the histidine and allows it to be positioned near the thioester bond of the oleoyl-CoA.<ref name="Sui">PMID:32433611</ref> His415 is now positioned to be able to interact with the DAG that enters through the lateral tunnel perpendicular to the cytosolic tunnel oleoyl-CoA enters through. <scene name='87/877557/Asn378/1'>Asn378</scene> has been hypothesized to be important in holding the DAG in a proper orientation to be able to interact with the oleoyl-CoA and undergo synthesis into a triglyceride. <ref name="Sui">PMID:32433611</ref>
+
of the ligand. In its <scene name='87/878228/Active_site/1'>bound</scene>conformation, a hydrogen bond is formed between His415 and Gln465 which stabilizes the histidine and allows it to be positioned near the thioester bond of the oleoyl-CoA.<ref name="Sui">PMID:32433611</ref> His415 is now positioned to be able to interact with the DAG that enters through the lateral tunnel perpendicular to the cytosolic tunnel oleoyl-CoA enters through. <scene name='87/877557/Asn378/1'>Asn378</scene> has been hypothesized to be important in holding the DAG in a proper orientation to be able to interact with the oleoyl-CoA and undergo synthesis into a triglyceride. <ref name="Sui">PMID:32433611</ref>
=== Mechanism ===
=== Mechanism ===

Revision as of 15:27, 24 April 2021

Human Diacylglycerol O-Transferase 1

Human Diacylglycerol O-Transferase 1 6VYI

Drag the structure with the mouse to rotate

References

[7] [1] [6] [3] [2] [4]

  1. 1.0 1.1 Cases S, Smith SJ, Zheng YW, Myers HM, Lear SR, Sande E, Novak S, Collins C, Welch CB, Lusis AJ, Erickson SK, Farese RV Jr. Identification of a gene encoding an acyl CoA:diacylglycerol acyltransferase, a key enzyme in triacylglycerol synthesis. Proc Natl Acad Sci U S A. 1998 Oct 27;95(22):13018-23. PMID:9789033
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Sui X, Wang K, Gluchowski NL, Elliott SD, Liao M, Walther TC, Farese RV Jr. Structure and catalytic mechanism of a human triacylglycerol-synthesis enzyme. Nature. 2020 May;581(7808):323-328. doi: 10.1038/s41586-020-2289-6. Epub 2020 May, 13. PMID:32433611 doi:http://dx.doi.org/10.1038/s41586-020-2289-6
  3. 3.0 3.1 Yen CL, Stone SJ, Koliwad S, Harris C, Farese RV Jr. Thematic review series: glycerolipids. DGAT enzymes and triacylglycerol biosynthesis. J Lipid Res. 2008 Nov;49(11):2283-301. doi: 10.1194/jlr.R800018-JLR200. Epub 2008, Aug 29. PMID:18757836 doi:http://dx.doi.org/10.1194/jlr.R800018-JLR200
  4. 4.0 4.1 4.2 4.3 4.4 4.5 4.6 Wang L, Qian H, Nian Y, Han Y, Ren Z, Zhang H, Hu L, Prasad BVV, Laganowsky A, Yan N, Zhou M. Structure and mechanism of human diacylglycerol O-acyltransferase 1. Nature. 2020 May;581(7808):329-332. doi: 10.1038/s41586-020-2280-2. Epub 2020 May, 13. PMID:32433610 doi:http://dx.doi.org/10.1038/s41586-020-2280-2
  5. Haas, J. T., Winter, H. S., Lim, E., Kirby, A., Blumenstiel, B., DeFelice, M., Gabriel, S., Jalas, C., Branski, D., Grueter, C. A., Toporovski, M. S., Walther, T. C., Daly, M. J., & Farese, R. V., Jr (2012). DGAT1 mutation is linked to a congenital diarrheal disorder. The Journal of clinical investigation, 122(12), 4680–4684. https://doi.org/10.1172/JCI64873
  6. 6.0 6.1 Gluchowski, N. L., Chitraju, C., Picoraro, J. A., Mejhert, N., Pinto, S., Xin, W., Kamin, D. S., Winter, H. S., Chung, W. K., Walther, T. C., & Farese, R. V., Jr (2017). Identification and characterization of a novel DGAT1 missense mutation associated with congenital diarrhea. Journal of lipid research, 58(6), 1230–1237. https://doi.org/10.1194/jlr.P075119
  7. Ransey E, Paredes E, Dey SK, Das SR, Heroux A, Macbeth MR. Crystal structure of the Entamoeba histolytica RNA lariat debranching enzyme EhDbr1 reveals a catalytic Zn(2+) /Mn(2+) heterobinucleation. FEBS Lett. 2017 Jul;591(13):2003-2010. doi: 10.1002/1873-3468.12677. Epub 2017, Jun 14. PMID:28504306 doi:http://dx.doi.org/10.1002/1873-3468.12677

Student Contributors

  • Megan Leaman
  • Grace Hall
  • Karina Latsko

Proteopedia Page Contributors and Editors (what is this?)

Megan Leaman

Personal tools