User:Megan Leaman/Sandbox 1
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< User:Megan Leaman(Difference between revisions)
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=== Conformation === | === Conformation === | ||
- | + | Since DGAT1 is a transmembrane protein, it has 3 distinct regions: cytosolic, transmembrane, and lumenal. Most of the enzyme exists within the membrane with small portions peeking out into the cytosol of the cell or lumen in the surrounding tissue. DGAT1 exists as a [https://en.wikipedia.org/wiki/Protein_dimer homodimer] of two identical chains, A and B. The homodimer interface is stabilized in two different ways. First, the transmembrane region is stabilized through large <scene name='87/877557/Hydrophobic_interface/4'>hydrophobic interactions</scene> between the TM1 helices on each of the chains. The second is through extensive <scene name='87/877557/Hydrophilic_interface/7'>hydrogen bonding interactions</scene> between the two chains in the cytosolic domain. <ref name="Sui">PMID:32433611</ref> <ref name="Wang">PMID:32433610</ref> | |
=== Tunnel System === | === Tunnel System === | ||
- | [[Image:DGAT tunnels.png|400 px|right|thumb|Figure 3: cytosolic tunnel (green) and hydrophobic tunnel (red)]] There are two main tunnels that allow the enzymatic activity of | + | [[Image:DGAT tunnels.png|400 px|right|thumb|Figure 3: cytosolic tunnel (green) and hydrophobic tunnel (red)]] There are two main tunnels that allow the enzymatic activity of DGAT1 to occur. The first is a <scene name='87/877557/Oleoyl_co_a_cytosolic_tunnel/4'>cytosolic tunnel</scene> where the hydrophilic region of the oleyol-CoA binds to the cytosolic face that forms between helices TM7 and TM8. The [https://en.wikipedia.org/wiki/Coenzyme_A CoA] region sits at the cytosolic face with the fatty acid chain extending the rest of the way through the enzyme tunnel and leads to the interior of the reaction chamber. <ref name="Wang">PMID:32433610</ref> Researchers are currently unsure of specifically what residues are involved in the binding of the oleoyl-CoA to the reaction chamber, but they believe that the hydrogen bonding of the <scene name='87/877557/Coa_binding_site/4'>coenzyme A motif</scene> that sits at the cytosolic face of the tunnel. Two residues, His382 and Arg404, are able to form hydrogen bonds to the ligand, and an additional residue, Lys391 forms a salt bridge with the phosphate group of CoA. When hydrophobic residues in the region were mutated, DGAT1 lost all enzymatic activity. <ref name="Wang">PMID:32433610</ref> <ref name="Sui">PMID:32433611</ref> |
The second is a <scene name='87/877557/Dag_entrance_tunnel/6'>transmembrane tunnel</scene> that is orthogonal to the cytosolic tunnel. This tunnel is in the transmembrane region of the enzyme which allows lipids in the membrane to easily access the location. <ref name="Sui">PMID:32433611</ref> Researchers have hypothesized that this tunnel is able to differentiate between DAG, its intended substrate, from other groups that would typically interact with an acyl-CoA, like cholesterol, due to its bent architecture. The bent nature of the tunnel would inhibit more stiff and planar molecules from entering the tunnel and interfering with the activity of the enzyme. <ref name="Sui">PMID:32433611</ref> | The second is a <scene name='87/877557/Dag_entrance_tunnel/6'>transmembrane tunnel</scene> that is orthogonal to the cytosolic tunnel. This tunnel is in the transmembrane region of the enzyme which allows lipids in the membrane to easily access the location. <ref name="Sui">PMID:32433611</ref> Researchers have hypothesized that this tunnel is able to differentiate between DAG, its intended substrate, from other groups that would typically interact with an acyl-CoA, like cholesterol, due to its bent architecture. The bent nature of the tunnel would inhibit more stiff and planar molecules from entering the tunnel and interfering with the activity of the enzyme. <ref name="Sui">PMID:32433611</ref> | ||
=== Active Site === | === Active Site === | ||
- | The active site of | + | The active site of DGAT1 is in the transmembrane region of the enzyme. When it is in its <scene name='87/877557/His_no_oleoyl/8'>unbound</scene> state and no oleoyl-CoA is in its tunnel, the sulfur of Met434 interacts with the catalytic Histidine, His415, which stabilizes the conformation. There are no major conformation changes that take place upon oleoyl-CoA binding into the cytosolic tunnel, however, several key residues change conformation to allow for the entrance of the ligand. In its <scene name='87/877557/Active_site/8'>bound</scene> conformation, His415 hydrogen bonds to Gln465 which stabilizes the Histidine and allows it to be positioned near the thioester bond of the oleoyl-CoA.<ref name="Sui">PMID:32433611</ref> The His415 interacts with the DAG that enters in a tunnel perpendicular to the oleoyl-CoA. <scene name='87/877557/Asn378/4'>Asn378</scene> has been hypothesized to be important in holding the DAG in a proper orientation to be able to interact with the oleoyl-CoA and become a triglyceride. <ref name="Sui">PMID:32433611</ref> |
=== Mechanism === | === Mechanism === | ||
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==Diseases== | ==Diseases== | ||
- | The two most common and well studied mutations in | + | The two most common and well studied mutations in DGAT1 are an [https://en.wikipedia.org/wiki/Exon exon] 8 deletion mutation and a <scene name='87/878228/L105/3'>L105P</scene> missense mutation. These mutations both lead to congenital diarrhea. |
The first discovery of mutations within the DGAT1 protein were found in chromosome 8 145541756 A→G. This mutation caused exon 8 to be skipped entirely, causing an in-frame deletion of 75 base pairs. <ref name=”Haas”> Haas, J. T., Winter, H. S., Lim, E., Kirby, A., Blumenstiel, B., DeFelice, M., Gabriel, S., Jalas, C., Branski, D., Grueter, C. A., Toporovski, M. S., Walther, T. C., Daly, M. J., & Farese, R. V., Jr (2012). DGAT1 mutation is linked to a congenital diarrheal disorder. The Journal of clinical investigation, 122(12), 4680–4684. https://doi.org/10.1172/JCI64873</ref> This deletion eliminates DGAT1 function, creating a null allele with no DGAT1 expression. This deletion mutation is the more severe mutation, and children with the loss of exon 8 and no DGAT1 function can only handle roughly 4-7% of their consumption to be fat containing calories. | The first discovery of mutations within the DGAT1 protein were found in chromosome 8 145541756 A→G. This mutation caused exon 8 to be skipped entirely, causing an in-frame deletion of 75 base pairs. <ref name=”Haas”> Haas, J. T., Winter, H. S., Lim, E., Kirby, A., Blumenstiel, B., DeFelice, M., Gabriel, S., Jalas, C., Branski, D., Grueter, C. A., Toporovski, M. S., Walther, T. C., Daly, M. J., & Farese, R. V., Jr (2012). DGAT1 mutation is linked to a congenital diarrheal disorder. The Journal of clinical investigation, 122(12), 4680–4684. https://doi.org/10.1172/JCI64873</ref> This deletion eliminates DGAT1 function, creating a null allele with no DGAT1 expression. This deletion mutation is the more severe mutation, and children with the loss of exon 8 and no DGAT1 function can only handle roughly 4-7% of their consumption to be fat containing calories. |
Current revision
Human Diacylglycerol O-Transferase 1
|
References
- ↑ Cases S, Smith SJ, Zheng YW, Myers HM, Lear SR, Sande E, Novak S, Collins C, Welch CB, Lusis AJ, Erickson SK, Farese RV Jr. Identification of a gene encoding an acyl CoA:diacylglycerol acyltransferase, a key enzyme in triacylglycerol synthesis. Proc Natl Acad Sci U S A. 1998 Oct 27;95(22):13018-23. PMID:9789033
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Sui X, Wang K, Gluchowski NL, Elliott SD, Liao M, Walther TC, Farese RV Jr. Structure and catalytic mechanism of a human triacylglycerol-synthesis enzyme. Nature. 2020 May;581(7808):323-328. doi: 10.1038/s41586-020-2289-6. Epub 2020 May, 13. PMID:32433611 doi:http://dx.doi.org/10.1038/s41586-020-2289-6
- ↑ Yen CL, Stone SJ, Koliwad S, Harris C, Farese RV Jr. Thematic review series: glycerolipids. DGAT enzymes and triacylglycerol biosynthesis. J Lipid Res. 2008 Nov;49(11):2283-301. doi: 10.1194/jlr.R800018-JLR200. Epub 2008, Aug 29. PMID:18757836 doi:http://dx.doi.org/10.1194/jlr.R800018-JLR200
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 Wang L, Qian H, Nian Y, Han Y, Ren Z, Zhang H, Hu L, Prasad BVV, Laganowsky A, Yan N, Zhou M. Structure and mechanism of human diacylglycerol O-acyltransferase 1. Nature. 2020 May;581(7808):329-332. doi: 10.1038/s41586-020-2280-2. Epub 2020 May, 13. PMID:32433610 doi:http://dx.doi.org/10.1038/s41586-020-2280-2
- ↑ Caldo, K., Acedo, J. Z., Panigrahi, R., Vederas, J. C., Weselake, R. J., & Lemieux, M. J. (2017). Diacylglycerol Acyltransferase 1 Is Regulated by Its N-Terminal Domain in Response to Allosteric Effectors. Plant physiology, 175(2), 667–680. https://doi.org/10.1104/pp.17.00934
- ↑ Denison, H., Nilsson, C., Löfgren, L., Himmelmann, A., Mårtensson, G., Knutsson, M., Al-Shurbaji, A., Tornqvist, H., & Eriksson, J. W. (2014). Diacylglycerol acyltransferase 1 inhibition with AZD7687 alters lipid handling and hormone secretion in the gut with intolerable side effects: a randomized clinical trial. Diabetes, obesity & metabolism, 16(4), 334–343. https://doi.org/10.1111/dom.12221
- ↑ Cao, J., Zhou, Y., Peng, H., Huang, X., Stahler, S., Suri, V., Qadri, A., Gareski, T., Jones, J., Hahm, S., Perreault, M., McKew, J., Shi, M., Xu, X., Tobin, J. F., & Gimeno, R. E. (2011). Targeting Acyl-CoA:diacylglycerol acyltransferase 1 (DGAT1) with small molecule inhibitors for the treatment of metabolic diseases. The Journal of biological chemistry, 286(48), 41838–41851. https://doi.org/10.1074/jbc.M111.245456
- ↑ Haas, J. T., Winter, H. S., Lim, E., Kirby, A., Blumenstiel, B., DeFelice, M., Gabriel, S., Jalas, C., Branski, D., Grueter, C. A., Toporovski, M. S., Walther, T. C., Daly, M. J., & Farese, R. V., Jr (2012). DGAT1 mutation is linked to a congenital diarrheal disorder. The Journal of clinical investigation, 122(12), 4680–4684. https://doi.org/10.1172/JCI64873
- ↑ Gluchowski, N. L., Chitraju, C., Picoraro, J. A., Mejhert, N., Pinto, S., Xin, W., Kamin, D. S., Winter, H. S., Chung, W. K., Walther, T. C., & Farese, R. V., Jr (2017). Identification and characterization of a novel DGAT1 missense mutation associated with congenital diarrhea. Journal of lipid research, 58(6), 1230–1237. https://doi.org/10.1194/jlr.P075119
Student Contributors
- Megan Leaman
- Grace Hall
- Karina Latsko