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===Dimer-Dimer Interface===
===Dimer-Dimer Interface===
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The <scene name='87/877604/Dimer_interface/19'>dimer-dimer interface</scene> is mobile and mostly hydrophobic, and the residues interact in a shape-complementary manner <ref name=”Shengcheng”>PMID:32424158</ref>. It was also found that the reaction chamber is shielded by a lid from the cytosolic side, which leads to low catalytic activity. The binding of acyl-CoA and cholesterol induce conformational changes that activate the tunnels necessary for substrates to enter them. Work is still being done to fully determine the mechanism of this reaction, but this is the proposed pathway <ref name=”Qian”>PMID:32433614</ref>. [[Image:Screen_Shot_2021-04-20_at_3.30.39_PM.jpg|250 px|right|thumb|Figure 3. ACAT1 Monomer in the Membrane. This shows the 9 transmembrane helices. Each helix is labeled and colored according to the different domains. The ligand is shown as ball and stick.]]
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The <scene name='87/877604/Dimer_interface/19'>dimer-dimer interface</scene> is mobile and mostly hydrophobic, and the residues interact in a shape-complementary manner <ref name=”Shengcheng”>PMID:32424158</ref>. It was also found that the reaction chamber is shielded by a lid from the cytosolic side, which leads to low catalytic activity. The binding of Acyl-CoA and cholesterol induce conformational changes that activate the tunnels necessary for substrates to enter them. Work is still being done to fully determine the mechanism of this reaction, but this is the proposed pathway <ref name=”Qian”>PMID:32433614</ref>. [[Image:Screen_Shot_2021-04-20_at_3.30.39_PM.jpg|250 px|right|thumb|Figure 3. ACAT1 Monomer in the Membrane. This shows the 9 transmembrane helices. Each helix is labeled and colored according to the different domains. The ligand is shown as ball and stick.]]
===Tunnels===
===Tunnels===
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The active site is accessed through three tunnels that lead from the [http://en.wikipedia.org/wiki/Lumen_(anatomy) lumen], [https://en.wikipedia.org/wiki/Cytosol cytosol], and [https://en.wikipedia.org/wiki/Transmembrane_protein transmembrane] space to the center of the catalytic site (Figure 4). The tunnels allow the introduction of reactants into the acyl transferase mechanism and the exit of the products to the correct location depending on their function (Figure 2). The cholesterol enters through the T tunnel while the acyl-CoA enters through the C tunnel. <ref name=”Qian”>PMID:32433614</ref>
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The active site is accessed through three tunnels that lead from the [http://en.wikipedia.org/wiki/Lumen_(anatomy) lumen], [https://en.wikipedia.org/wiki/Cytosol cytosol], and [https://en.wikipedia.org/wiki/Transmembrane_protein transmembrane] space to the center of the catalytic site (Figure 4). The tunnels allow the introduction of reactants into the acyltransferase mechanism and the exit of the products to the correct location depending on their function (Figure 2). The cholesterol enters through the T tunnel while the Acyl-CoA enters through the C tunnel. <ref name=”Qian”>PMID:32433614</ref>
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The <scene name='87/877605/C_tunnel/6'>C tunnel</scene> is open to the cytosolic side of the protein in which the Acyl CoA enters into the catalytic domain.
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The <scene name='87/877605/C_tunnel/6'>C tunnel</scene> is open to the cytosolic side of the protein in which the Acyl-CoA enters into the catalytic domain.
The <scene name='87/877605/T_tunnel/3'>T tunnel</scene> is the transmembrane tunnel in which the cholesterol enters into the catalytic domain space. Important <scene name='87/877605/T_tunnel_residues/3'>residues</scene> of the T tunnel include Arg262, Phe263, and Leu306. These residues are important for the proper entrance and orientation of the cholesterol to allow for its deprotonation in the mechanism. Upon mutation of these residues, the tunnel function was inhibited. <ref name=”Qian”>PMID:32433614</ref>
The <scene name='87/877605/T_tunnel/3'>T tunnel</scene> is the transmembrane tunnel in which the cholesterol enters into the catalytic domain space. Important <scene name='87/877605/T_tunnel_residues/3'>residues</scene> of the T tunnel include Arg262, Phe263, and Leu306. These residues are important for the proper entrance and orientation of the cholesterol to allow for its deprotonation in the mechanism. Upon mutation of these residues, the tunnel function was inhibited. <ref name=”Qian”>PMID:32433614</ref>
The <scene name='87/877605/L_tunnel/4'>L tunnel</scene> provides a potential opening to the lumen side. The enzymatic reaction occurs at the intersection of these two tunnels. It is catalyzed at the intersection of the two tunnels, where the His460 residue is located. The CoASH is released to the cytosol by way of the C tunnel, but the cholesterol ester either exits from the T tunnel to the membrane or through the L tunnel to the lumen. The specific mechanism by which the cholesterol ester product exits the tunnel to enter the lumen has not yet been determined.
The <scene name='87/877605/L_tunnel/4'>L tunnel</scene> provides a potential opening to the lumen side. The enzymatic reaction occurs at the intersection of these two tunnels. It is catalyzed at the intersection of the two tunnels, where the His460 residue is located. The CoASH is released to the cytosol by way of the C tunnel, but the cholesterol ester either exits from the T tunnel to the membrane or through the L tunnel to the lumen. The specific mechanism by which the cholesterol ester product exits the tunnel to enter the lumen has not yet been determined.
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===Active Site===
===Active Site===
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The catalytic site contains <scene name='87/877605/Catalytic_residues/7'>catalytic residues</scene> that are essential to the mechanism of the ACAT1 mechanism. These residues include His460 to function as a base catalyst and Asn421 which functions as transition state stabilization with hydrogen bonding. Also important for orientation of the Acyl CoA ligand is the presence of hydrophobic residues to stabilize the fatty acid (Trp407,Trp420). The active site is at the intersection of all three tunnels to allow a central position for the acyltransferase to occur.
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The catalytic site contains <scene name='87/877605/Catalytic_residues/7'>catalytic residues</scene> that are essential to the mechanism of the ACAT1 mechanism. These residues include His460 to function as a base catalyst and Asn421 which functions as transition state stabilization with hydrogen bonding. Also important for orientation of the Acyl-CoA ligand is the presence of hydrophobic residues to stabilize the fatty acid (Trp407,Trp420). The active site is at the intersection of all three tunnels to allow a central position for the acyltransferase to occur.
==Mechanism==
==Mechanism==
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The mechanism of the acyltransferase reaction occurs in the catalytic site of each monomer in the dimer of ACAT1. The T tunnel and and C tunnel converge to the same space to allow the proper orientation of the Acyl CoA and the incoming cholesterol from the transmembrane. The Acyl CoA is oriented in a way to allow the His460 to act as a base catalyst to begin the reaction by deprotonation of the cholesterol which allows it to attack the carbonyl carbon which breaks the sulfur carbonyl bond (Figure 5). The H460 is positioned to deprotonate the cholesterol upon entering through the T tunnel: Acyl CoA upon entering is positioned to where the sulfur bonded to the carboxyl carbon is at the direct intersection of the T tunnel into the active site. The Acyl CoA is held in place by the <scene name='87/877605/Catalytic_residues/5'>oxyanion hole</scene> of Asn 421. This mechanism produces Acyl-CoASH and cholesteryl ester. The Acyl-CoASH leaves through the C tunnel to the cytosol. <ref name=”Qian”>doi:10.1038/s41586-020-2290-0</ref>
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The mechanism of the acyltransferase reaction occurs in the catalytic site of each monomer in the dimer of ACAT1. The T tunnel and and C tunnel converge to the same space to allow the proper orientation of the Acyl CoA and the incoming cholesterol from the transmembrane. The Acyl CoA is oriented in a way to allow the His460 to act as a base catalyst to begin the reaction by deprotonation of the cholesterol which allows it to attack the carbonyl carbon which breaks the sulfur carbonyl bond (Figure 5). The His460 is positioned to deprotonate the cholesterol upon entering through the T tunnel: Acyl-CoA upon entering is positioned to where the sulfur bonded to the carboxyl carbon is at the direct intersection of the T tunnel into the active site. The Acyl CoA is held in place by the <scene name='87/877605/Catalytic_residues/5'>oxyanion hole</scene> of Asn421. This mechanism produces Acyl-CoASH and cholesteryl ester. The Acyl-CoASH leaves through the C tunnel to the cytosol. <ref name=”Qian”>doi:10.1038/s41586-020-2290-0</ref>
[[Image:finalmechanism.jpg|550px|left|thumb|Figure 5: Acyltransferase mechanism of ACAT1 with conserved MBOAT family catalytic residue.]]
[[Image:finalmechanism.jpg|550px|left|thumb|Figure 5: Acyltransferase mechanism of ACAT1 with conserved MBOAT family catalytic residue.]]
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==Inhibitor==
==Inhibitor==
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<scene name='87/877626/Inhibitor/7'>CI-976</scene> is known as a small molecule inhibitor that is part of the fatty acyl amide analog family, and functions as a competitive inhibitor of Acyl-CoA (Figure 6) <ref name "Shengcheng">PMID:32424158</ref><ref name="Guan"> doi:10.1038/s41467-020-16288-4</ref>. Guan discussed that this inhibitor in previous studies had shown that CI-976 reduced the size of atherosclerotic plaques and cholesterol levels in plasma <ref name="Guan"> doi:10.1038/s41467-020-16288-4</ref> .
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<scene name='87/877626/Inhibitor/7'>CI-976</scene> is known as a small molecule inhibitor that is part of the fatty acylamide analog family, and functions as a competitive inhibitor of Acyl-CoA (Figure 6) <ref name "Shengcheng">PMID:32424158</ref><ref name="Guan"> doi:10.1038/s41467-020-16288-4</ref>. Guan discussed that this inhibitor in previous studies had shown that CI-976 reduced the size of atherosclerotic plaques and cholesterol levels in plasma <ref name="Guan"> doi:10.1038/s41467-020-16288-4</ref> .
The <scene name='87/877626/Overlay/13'>overlay</scene> illustrates how CI-976 can act as a competitive inhibitor of Acyl-CoA. Structurally, Acyl-CoA and CI-976 are both largely hydrophobic, each with long hydrophobic tails. As evident in this image, the hydrophobic tail of CI-976, mimics that of Acyl-CoA. This allows for the CI-976 inhibitor to be recognized by ACAT1 and to bind tightly in the active site pocket, blocking Acyl-CoA from binding, thus rendering ACAT1 unable to perform its reaction. [[Image: CI-976_chemdraw.jpg|300 px|right|thumb|Figure 6. CI-976 Inhibitor]]
The <scene name='87/877626/Overlay/13'>overlay</scene> illustrates how CI-976 can act as a competitive inhibitor of Acyl-CoA. Structurally, Acyl-CoA and CI-976 are both largely hydrophobic, each with long hydrophobic tails. As evident in this image, the hydrophobic tail of CI-976, mimics that of Acyl-CoA. This allows for the CI-976 inhibitor to be recognized by ACAT1 and to bind tightly in the active site pocket, blocking Acyl-CoA from binding, thus rendering ACAT1 unable to perform its reaction. [[Image: CI-976_chemdraw.jpg|300 px|right|thumb|Figure 6. CI-976 Inhibitor]]

Revision as of 18:47, 27 April 2021

Acyl-Coenzyme A: Cholesterol Acetyltransferase 1 (ACAT1): Function, Structure, and Inhibition

ACAT

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References

  1. Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
  2. Farese RV Jr. The nine lives of ACAT inhibitors. Arterioscler Thromb Vasc Biol. 2006 Aug;26(8):1684-6. doi:, 10.1161/01.ATV.0000227511.35456.90. PMID:16857957 doi:http://dx.doi.org/10.1161/01.ATV.0000227511.35456.90
  3. Guan C, Niu Y, Chen SC, Kang Y, Wu JX, Nishi K, Chang CCY, Chang TY, Luo T, Chen L. Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor. Nat Commun. 2020 May 18;11(1):2478. doi: 10.1038/s41467-020-16288-4. PMID:32424158 doi:http://dx.doi.org/10.1038/s41467-020-16288-4
  4. Cite error: Invalid <ref> tag; no text was provided for refs named Qian
  5. Guan C, Niu Y, Chen SC, Kang Y, Wu JX, Nishi K, Chang CCY, Chang TY, Luo T, Chen L. Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor. Nat Commun. 2020 May 18;11(1):2478. doi: 10.1038/s41467-020-16288-4. PMID:32424158 doi:http://dx.doi.org/10.1038/s41467-020-16288-4
  6. Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
  7. Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
  8. Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
  9. Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
  10. Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
  11. 11.0 11.1 11.2 11.3 11.4 Guan C, Niu Y, Chen SC, Kang Y, Wu JX, Nishi K, Chang CCY, Chang TY, Luo T, Chen L. Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor. Nat Commun. 2020 May 18;11(1):2478. doi: 10.1038/s41467-020-16288-4. PMID:32424158 doi:http://dx.doi.org/10.1038/s41467-020-16288-4
  12. 12.0 12.1 12.2 Guan C, Niu Y, Chen SC, Kang Y, Wu JX, Nishi K, Chang CCY, Chang TY, Luo T, Chen L. Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor. Nat Commun. 2020 May 18;11(1):2478. doi: 10.1038/s41467-020-16288-4. PMID:32424158 doi:http://dx.doi.org/10.1038/s41467-020-16288-4
  13. Ayyagari VN, Wang X, Diaz-Sylvester PL, Groesch K, Brard L. Assessment of acyl-CoA cholesterol acyltransferase (ACAT-1) role in ovarian cancer progression-An in vitro study. PLoS One. 2020 Jan 24;15(1):e0228024. doi: 10.1371/journal.pone.0228024., eCollection 2020. PMID:31978092 doi:http://dx.doi.org/10.1371/journal.pone.0228024
  14. Vaziri ND, Liang KH. Acyl-coenzyme A:cholesterol acyltransferase inhibition ameliorates proteinuria, hyperlipidemia, lecithin-cholesterol acyltransferase, SRB-1, and low-denisty lipoprotein receptor deficiencies in nephrotic syndrome. Circulation. 2004 Jul 27;110(4):419-25. doi: 10.1161/01.CIR.0000136023.70841.0F. , Epub 2004 Jul 19. PMID:15262831 doi:http://dx.doi.org/10.1161/01.CIR.0000136023.70841.0F
  15. Willner EL, Tow B, Buhman KK, Wilson M, Sanan DA, Rudel LL, Farese RV Jr. Deficiency of acyl CoA:cholesterol acyltransferase 2 prevents atherosclerosis in apolipoprotein E-deficient mice. Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):1262-7. doi: 10.1073/pnas.0336398100., Epub 2003 Jan 21. PMID:12538880 doi:http://dx.doi.org/10.1073/pnas.0336398100
  16. 16.0 16.1 Shibuya Y, Chang CC, Chang TY. ACAT1/SOAT1 as a therapeutic target for Alzheimer's disease. Future Med Chem. 2015;7(18):2451-67. doi: 10.4155/fmc.15.161. Epub 2015 Dec 15. PMID:26669800 doi:http://dx.doi.org/10.4155/fmc.15.161

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