This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5qub
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='5qub' size='340' side='right'caption='[[5qub]], [[Resolution|resolution]] 1.35Å' scene=''> | <StructureSection load='5qub' size='340' side='right'caption='[[5qub]], [[Resolution|resolution]] 1.35Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5qub]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[5qub]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=6txy 6txy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QUB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5QUB FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D48:naphthalene-2,3-diol'>D48</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D48:naphthalene-2,3-diol'>D48</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qub FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qub OCA], [https://pdbe.org/5qub PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qub RCSB], [https://www.ebi.ac.uk/pdbsum/5qub PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qub ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qub FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qub OCA], [https://pdbe.org/5qub PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qub RCSB], [https://www.ebi.ac.uk/pdbsum/5qub PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qub ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/RADA_PYRFU RADA_PYRFU] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Atcc 43587]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Pyrococcus furiosus]] |
| - | [[Category: | + | [[Category: Hyvonen M]] |
| - | [[Category: | + | [[Category: Marsh M]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
HumRadA1.2 soaked with napht-2,3-diol for 30 seconds at 20 mM
| |||||||||||
